Difference between revisions of "ParticleSizer"

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== Installation ==
 
== Installation ==
 
The ParticleSizer script combines a number of different plugins. The most easy way is activate Biomedgroup & ParticleSizer update site.  
 
The ParticleSizer script combines a number of different plugins. The most easy way is activate Biomedgroup & ParticleSizer update site.  
 +
 
It is recommended to install R to get better plots. When this point is skipped, a
 
It is recommended to install R to get better plots. When this point is skipped, a
stripped-down plot will be shown.
+
stripped-down plot will be shown:
1. Download the latest R: https://cran.uni-muenster.de/
+
 
1.1 Download the Rserver package:
+
# Download the latest R: https://cran.uni-muenster.de/
 +
## Download the Rserver package:
 
https://rforge.net/bin/windows/contrib/3.0/Rserve_1.8-0.zip
 
https://rforge.net/bin/windows/contrib/3.0/Rserve_1.8-0.zip
1.2 Download the MASS package:
+
## Download the MASS package:
 
https://cran.r-project.org/bin/windows/contrib/3.2/MASS_7.3-45.zip
 
https://cran.r-project.org/bin/windows/contrib/3.2/MASS_7.3-45.zip
1.3 Start R and select the packages downloaded in 5.2 and 5.3 via "Start Packages -> Install packages from local zip files"
+
## Start R and select the packages downloaded in 5.2 and 5.3 via "Start Packages -> Install packages from local zip files"
  
 
== Examples ==
 
== Examples ==

Revision as of 05:23, 27 June 2016

ParticleSizer (Fiji)
Author Thorsten Wagner
Maintainer Thorsten Wagner
File ParticleSizer_.jar [1]
Source Github [2]
Latest version v1.0.0(27. Jun 2016)
Development status active


Purpose

The ParticleSizer script was developed to automatically measures the distributions of the characteristic size and shape properties of a nanomaterial. In the scope of implementing the European Commission definition of a nanomaterial, the minimal external dimension of the primary particles of a particulate material is assessed as the minimal feret diameter from electron microscopy images. Other size and shape parameters are measured simultaneously.

Installation

The ParticleSizer script combines a number of different plugins. The most easy way is activate Biomedgroup & ParticleSizer update site.

It is recommended to install R to get better plots. When this point is skipped, a stripped-down plot will be shown:

  1. Download the latest R: https://cran.uni-muenster.de/
    1. Download the Rserver package:

https://rforge.net/bin/windows/contrib/3.0/Rserve_1.8-0.zip

    1. Download the MASS package:

https://cran.r-project.org/bin/windows/contrib/3.2/MASS_7.3-45.zip

    1. Start R and select the packages downloaded in 5.2 and 5.3 via "Start Packages -> Install packages from local zip files"

Examples