Difference between revisions of "Fiji"

(Projects: edited level sets link)
(Downloads: Windows updates)
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== Downloads ==
 
== Downloads ==
  
 +
'''Update: the Windows version sometimes failed to start due to memory issues.'''
 
'''Update: the MacOSX version crashed on most Macs; the link below points to a fixed version.'''
 
'''Update: the MacOSX version crashed on most Macs; the link below points to a fixed version.'''
  
 
* {{Download|linux|tar.bz2|Linux}}
 
* {{Download|linux|tar.bz2|Linux}}
 
* {{Download|linux64|tar.bz2|Linux (64-bit)}}
 
* {{Download|linux64|tar.bz2|Linux (64-bit)}}
* {{Download|win32|zip|Windows}}
+
* [http://pacific.mpi-cbg.de/downloads/snapshots/fiji-win32.zip Windows]
* {{Download|win64|zip|Windows (64-bit)}}
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* [http://pacific.mpi-cbg.de/downloads/snapshots/fiji-win64.zip Windows (64-bit)]
 
* [http://pacific.mpi-cbg.de/downloads/snapshots/fiji-macosx.dmg MacOSX]. See the [[MacOSX tips]]
 
* [http://pacific.mpi-cbg.de/downloads/snapshots/fiji-macosx.dmg MacOSX]. See the [[MacOSX tips]]
 
* {{Download|all|tar.bz2|All platforms (includes all JREs)}}
 
* {{Download|all|tar.bz2|All platforms (includes all JREs)}}

Revision as of 08:04, 10 November 2008


Fiji

Fiji Is Just ImageJ (batteries included)

Contents


Examples

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.

Stitching of images: Automatically reconstruct tiled 2D/3D acquisitions. The example shown (6 times 512x512x86 px) took 90 seconds.
3D Viewer: hardware-accelerated 3D visualization of image stacks as volumes, orthoslices and meshes.
Simple Neurite Tracer: semi-automatic tracing of neurons.

Feature correspondences: Automatically extracted landmark correspondences using the MOPS descriptor.

Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature Extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
Transform
VIB Protocol
  • Label-based 3D alignment of image stacks.
ImageJA
  • The core of Fiji.

Downloads

Update: the Windows version sometimes failed to start due to memory issues. Update: the MacOSX version crashed on most Macs; the link below points to a fixed version.

See the Downloads page for debian packages and others.

License

Fiji is released under the General Public License.

Each component has its own license.