Difference between revisions of "Fiji"

(Projects)
Line 26: Line 26:
 
;[http://132.187.25.13/home/?category=Download&page=Viewer3D 3D Viewer]
 
;[http://132.187.25.13/home/?category=Download&page=Viewer3D 3D Viewer]
 
* Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
 
* Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
;[http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2]
+
;[[TrakEM2]]
 
* Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
 
* Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
 
;[[Plugins_Menu#Feature_Extraction|Feature extraction]]
 
;[[Plugins_Menu#Feature_Extraction|Feature extraction]]

Revision as of 05:22, 16 October 2008


Fiji

Fiji Is Just ImageJ (batteries included)

Contents


Examples

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.

Stitching of images: Automatically reconstruct tiled 2D/3D acquisitions. The example shown (6 times 512x512x86 px) took 90 seconds.
3D Viewer: hardware-accelerated 3D visualization of image stacks as volumes, orthoslices and meshes.
Simple Neurite Tracer: semi-automatic tracing of neurons.

Feature correspondences: Automatically extracted landmark correspondences using the MOPS descriptor.

Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
ImageJA
  • The core of Fiji.

Downloads

See the Downloads page for debian packages and others.

License

Fiji is released under the General Public License.

Each component has its own license.