Difference between revisions of "Fiji"

(Added trakem2 example. More comming.)
(Added example for Simple Neurite Tracer)
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= Fiji =
 
= Fiji =
<b>Fiji</b> Is Just ImageJ (batteries included)
+
<b>Fiji</b> Is Just [http://rsb.info.nih.gov/ij ImageJ] (batteries included)
  
* [[:Category:Plugins|Plugins]]
+
* Bundled [[:Category:Plugins|Plugins]]
 
* [[Plugins Menu]]
 
* [[Plugins Menu]]
 
* [[:Category:Scripting|Scripting]]: in [[Javascript_Scripting|Javascript]], in [[JRuby_Scripting|JRuby]], in [[Jython_Scripting|Jython]], in [[Clojure_Scripting|Clojure]] (see also [[Scripting Help]]).
 
* [[:Category:Scripting|Scripting]]: in [[Javascript_Scripting|Javascript]], in [[JRuby_Scripting|JRuby]], in [[Jython_Scripting|Jython]], in [[Clojure_Scripting|Clojure]] (see also [[Scripting Help]]).
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{|
 
{|
|style="vertical-align:top" |[[Image:Trakem2-snap.jpg|thumb|180px|TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each]]
+
|style="vertical-align:top" |[[Image:Trakem2-snap.jpg|thumb|180px|TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.]]
 +
|style="vertical-align:top" |[[Image:Simple-Neurite-Tracer.jpg|thumb|180px|Simple Neurite Tracer: semi-automatic tracing of neurons.]]
 
|}
 
|}
  
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* '''[[Plugins_Menu#Registration|Image registration]]:''' [http://biocomp.cnb.uam.es/~iarganda/bUnwarpJ/ bUnwarpJ], [[Register_Virtual_Stack_Slices|stack slice registration]], image montage (via [http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2]) with global optimization (in 2D and across sections).
 
* '''[[Plugins_Menu#Registration|Image registration]]:''' [http://biocomp.cnb.uam.es/~iarganda/bUnwarpJ/ bUnwarpJ], [[Register_Virtual_Stack_Slices|stack slice registration]], image montage (via [http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2]) with global optimization (in 2D and across sections).
 
* '''[[Stitching 3D]]:''' stitch image stacks across X,Y,Z.
 
* '''[[Stitching 3D]]:''' stitch image stacks across X,Y,Z.
* '''[[Plugins_Menu#Segmentation|Segmentation]]:''' [http://homepages.inf.ed.ac.uk/s9808248/imagej/tracer/ Simple Neurite Tracer], [http://132.187.25.13/home/?category=Download&page=SegmentationEditor Segmentation Editor], manual (via [http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2]), [[Plugins_Menu#Segmentation|Level Sets]]
+
* '''[[Plugins_Menu#Segmentation|Segmentation]]:''' [http://homepages.inf.ed.ac.uk/s9808248/imagej/tracer/ Simple Neurite Tracer], [http://132.187.25.13/home/?category=Download&page=SegmentationEditor Segmentation Editor], manual (via [http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2]), [[Plugins_Menu#Segmentation|Level Sets]].
  
  

Revision as of 10:48, 15 October 2008


Fiji

Fiji Is Just ImageJ (batteries included)

Downloads

Examples

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.
Simple Neurite Tracer: semi-automatic tracing of neurons.


Projects


License

Fiji is released under the General Public License.

Each component has its own license.