Difference between revisions of "Fiji"

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* Manual (via [http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2])
 
* Manual (via [http://www.ini.uzh.ch/~acardona/trakem2.html TrakEM2])
 
* [[Level Sets]]
 
* [[Level Sets]]
 +
* [[Trainable Segmentation Plugin|Trainable Segmentation]]
 
;[[:Category:Transform|Transform]]
 
;[[:Category:Transform|Transform]]
 
* [[Distortion correction]]: correct lens deformation induced by the microscope (optical and electron microscopy). See the [http://www.kaynig.de/downloads/DistortionCorrectionPlugin_Manual.pdf Distortion Correction plugin manual].
 
* [[Distortion correction]]: correct lens deformation induced by the microscope (optical and electron microscopy). See the [http://www.kaynig.de/downloads/DistortionCorrectionPlugin_Manual.pdf Distortion Correction plugin manual].

Revision as of 14:53, 22 March 2010

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Fiji is an image processing package based on ImageJ.

For users, Fiji is easy to install and update, bundles a set of plugins in a coherent menu structure (and updatable), along with comprehensive documentation.

For developers, Fiji as an open source project is hosted on a Git source version control repository, with access to the source code of all internals, libraries and plugins, and eases the development and scripting of plugins.

Download Fiji now  Yada.png

News


Browse the news archive.

Documentation

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Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature Extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
Transform
VIB Protocol
  • Label-based 3D alignment of image stacks.
ImageJA
  • The core of Fiji.
Skeletons and tree analysis

Downloads

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See the Downloads page for debian packages and others.

License

Fiji is released under the General Public License.

Each component has its own license.