Difference between revisions of "Fiji"

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* [[:Category:Scripting|Scripting]]: in [[Javascript_Scripting|Javascript]], in [[JRuby_Scripting|JRuby]], in [[Jython_Scripting|Jython]], in [[Clojure_Scripting|Clojure]] (see also [[Scripting Help]]).
 
* [[:Category:Scripting|Scripting]]: in [[Javascript_Scripting|Javascript]], in [[JRuby_Scripting|JRuby]], in [[Jython_Scripting|Jython]], in [[Clojure_Scripting|Clojure]] (see also [[Scripting Help]]).
 
* [[Developing_Fiji|Documentation]] for developers. '''[[Fiji Build System]]''' build system. [http://pacific.mpi-cbg.de/bugzilla/ Report a bug] and see [http://pacific.mpi-cbg.de/cgi-bin/bugzilla/buglist.cgi?query_format=specific&order=relevance+desc&bug_status=__open__&product=&content= current bugs].
 
* [[Developing_Fiji|Documentation]] for developers. '''[[Fiji Build System]]''' build system. [http://pacific.mpi-cbg.de/bugzilla/ Report a bug] and see [http://pacific.mpi-cbg.de/cgi-bin/bugzilla/buglist.cgi?query_format=specific&order=relevance+desc&bug_status=__open__&product=&content= current bugs].
* Find contact information and help (also about the Wiki markup syntax, or how to get an account) [[Help|here]].
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* [[Help|Find contact information, mailing list, IRC and help]] (also about the Wiki markup syntax, or how to get an account).
 
 
  
 
== Snapshots ==
 
== Snapshots ==

Revision as of 07:08, 24 September 2009

Fiji

Fiji is an image processing package based on ImageJ.

For users, Fiji is easy to install and update, bundles a set of plugins in a coherent menu structure (and updatable), along with comprehensive documentation.

For developers, Fiji as an open source project is hosted on a git source version control repository, with access to the source code of all internals, libraries and plugins, and eases the development and scripting of plugins.

Download Fiji now Dai.png

News

<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5%7Cshort%7Cmax=5</rss>


Browse the news archive.

Contents

Snapshots

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.

Stitching of images: Automatically reconstruct tiled 2D/3D acquisitions. The example shown (6 times 512x512x86 px) took 90 seconds.
3D Viewer: hardware-accelerated 3D visualization of image stacks as volumes, orthoslices and meshes.
Simple Neurite Tracer: semi-automatic tracing of neurons.

Feature correspondences: Automatically extracted landmark correspondences using the MOPS descriptor.

Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature Extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
Transform
VIB Protocol
  • Label-based 3D alignment of image stacks.
ImageJA
  • The core of Fiji.
Skeletons and tree analysis

Downloads

Update: new version "Dresden-2009" was released.

Template:DownloadsCurrent

See the Downloads page for debian packages and others.

License

Fiji is released under the General Public License.

Each component has its own license.