Difference between revisions of "Fiji"

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;[http://repo.or.cz/w/imageja.git/ ImageJA]
 
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* The core of Fiji.
 
* The core of Fiji.
 
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;[[:Category:Skeleton|Skeletons and tree analysis]]
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* [[Skeletonize3D|Skeletonize]] and [[AnalyzeSkeleton|Analyze skeletons]]
  
 
== [[Downloads]] ==
 
== [[Downloads]] ==

Revision as of 02:44, 8 September 2009

Fiji

Fiji is an image processing package based on ImageJ.

For users, Fiji is easy to install and update, bundles a set of plugins in a coherent menu structure (and updatable), along with comprehensive documentation.

For developers, Fiji as an open source project is hosted on a git source version control repository, with access to the source code of all internals, libraries and plugins, and eases the development and scripting of plugins.

Download Fiji now Dai.png

News

<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5%7Cshort%7Cmax=5</rss>


Browse the news archive.

Contents


Snapshots

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.

Stitching of images: Automatically reconstruct tiled 2D/3D acquisitions. The example shown (6 times 512x512x86 px) took 90 seconds.
3D Viewer: hardware-accelerated 3D visualization of image stacks as volumes, orthoslices and meshes.
Simple Neurite Tracer: semi-automatic tracing of neurons.

Feature correspondences: Automatically extracted landmark correspondences using the MOPS descriptor.

Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature Extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
Transform
VIB Protocol
  • Label-based 3D alignment of image stacks.
ImageJA
  • The core of Fiji.
Skeletons and tree analysis

Downloads

Update: new version "Dresden-2009" was released.

Template:DownloadsCurrent

See the Downloads page for debian packages and others.

License

Fiji is released under the General Public License.

Each component has its own license.