Difference between revisions of "Fiji"

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=<span style="line-height:48px; font-size:48px">'''Fiji'''</span>=
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[[About|Fiji]] is an image processing package based on [http://rsb.info.nih.gov/ij ImageJ].
== [[Special:NewsChannel|News]] ==
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For users, Fiji is [[Downloads|easy to install]] and update, bundles a [[:Category:Plugins|set of plugins]] in a [[Plugins Menu|coherent menu structure]] (and updatable), along with comprehensive documentation.
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For [[Developing_Fiji|developers]], Fiji as an open source project is hosted on a git source version control [http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi repository], with access to the source code of all internals, libraries and plugins, and eases the [[Developing_Fiji|development]] and [[:Category:Scripting|scripting]] of plugins.
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<b><i>[[Downloads|Download Fiji now]]</i></b>
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<span class="plainlinks">[{{SERVER}}{{localurl:Downloads}} http://pacific.mpi-cbg.de/wiki/images/0/04/Dai.png]</span>
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== News ==
 
<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5|short|max=5</rss>
 
<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5|short|max=5</rss>
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=<span style="line-height:48px; font-size:48px">'''Fiji'''</span>=
 
  
[[About|Fiji]] Is Just [http://rsb.info.nih.gov/ij ImageJ] (batteries included) -- see [[About|About Fiji]].
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Browse the [[:Category:News|news archive]].
  
  
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* Find contact information and help (also about the Wiki markup syntax, or how to get an account) [[Help|here]].
 
* Find contact information and help (also about the Wiki markup syntax, or how to get an account) [[Help|here]].
  
== Examples ==
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== Snapshots ==
  
 
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Revision as of 03:59, 30 March 2009

Fiji

Fiji is an image processing package based on ImageJ.

For users, Fiji is easy to install and update, bundles a set of plugins in a coherent menu structure (and updatable), along with comprehensive documentation.

For developers, Fiji as an open source project is hosted on a git source version control repository, with access to the source code of all internals, libraries and plugins, and eases the development and scripting of plugins.

Download Fiji now Dai.png

News

<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5%7Cshort%7Cmax=5</rss>


Browse the news archive.


Contents


Snapshots

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.

Stitching of images: Automatically reconstruct tiled 2D/3D acquisitions. The example shown (6 times 512x512x86 px) took 90 seconds.
3D Viewer: hardware-accelerated 3D visualization of image stacks as volumes, orthoslices and meshes.
Simple Neurite Tracer: semi-automatic tracing of neurons.

Feature correspondences: Automatically extracted landmark correspondences using the MOPS descriptor.


Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature Extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
Transform
VIB Protocol
  • Label-based 3D alignment of image stacks.
ImageJA
  • The core of Fiji.


Downloads

Update: new version "Luxembourg" was released.

Template:DownloadsCurrent

See the Downloads page for debian packages and others.


License

Fiji is released under the General Public License.

Each component has its own license.