Difference between revisions of "Fiji"

(Added a box for "What is Fiji")
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=<span style="line-height:48px; font-size:48px">'''Fiji'''</span>=
 
=<span style="line-height:48px; font-size:48px">'''Fiji'''</span>=
  
'''[[WhatIsFiji|Fiji]]''' Is Just [http://rsb.info.nih.gov/ij ImageJ] (batteries included)
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[[About|Fiji]] Is Just [http://rsb.info.nih.gov/ij ImageJ] (batteries included) -- see [[About|About Fiji]].
 
 
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== [[Special:NewsChannel|News]] ==
 
<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5|short|max=5</rss>
 
  
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== Contents ==
 
== Contents ==
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* [[Help]]
 
* [[Help]]
  
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== [[Special:NewsChannel|News]] ==
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<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5|short|max=5</rss>
{{WhatIsFiji}}
 
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== Examples ==
 
== Examples ==
  
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|}
 
|}
  
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== Projects ==
 
== Projects ==
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* The core of Fiji.
 
* The core of Fiji.
  
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== [[Downloads]] ==
 
== [[Downloads]] ==
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See the [[Downloads]] page for debian packages and others.
 
See the [[Downloads]] page for debian packages and others.
  
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== License ==
 
== License ==
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Each component has [http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=LICENSES;hb=HEAD its own license].
 
Each component has [http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=LICENSES;hb=HEAD its own license].
 
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Revision as of 08:53, 29 March 2009



Fiji

Fiji Is Just ImageJ (batteries included) -- see About Fiji.


Contents


News

<rss>http://pacific.mpi-cbg.de/wiki/index.php?title=Special:NewsChannel&format=rss20&limit=5%7Cshort%7Cmax=5</rss>


Examples

TrakEM2: 359 montages of 13x13 tiles of 2048x2048 pixels each.

Stitching of images: Automatically reconstruct tiled 2D/3D acquisitions. The example shown (6 times 512x512x86 px) took 90 seconds.
3D Viewer: hardware-accelerated 3D visualization of image stacks as volumes, orthoslices and meshes.
Simple Neurite Tracer: semi-automatic tracing of neurons.

Feature correspondences: Automatically extracted landmark correspondences using the MOPS descriptor.


Projects

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
Feature Extraction
  • SIFT and MOPS.
Image registration
Stitching 2D/3D
  • Stitch multiple image stacks across X,Y,Z.
Segmentation
Transform
VIB Protocol
  • Label-based 3D alignment of image stacks.
ImageJA
  • The core of Fiji.


Downloads

Update: new version "Luxembourg" was released.

Template:DownloadsCurrent

See the Downloads page for debian packages and others.


License

Fiji is released under the General Public License.

Each component has its own license.