Difference between revisions of "Learnathon 2018"

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===Start a Maven project with Eclipse===
 
===Start a Maven project with Eclipse===
  
Slides online:
+
See [https://github.com/fiji/learnathon-2018/blob/master/Start%20a%20Maven%20Project.pdf slides]
* <code>https://cloud.mpi-cbg.de/index.php/s/yoFINAFUAH8Y2jC#pdfviewer</code>
 
  
 
Git repos to clone:
 
Git repos to clone:
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===ImageJ2 and SciJava===
 
===ImageJ2 and SciJava===
 
* Search for stuff in our ecosystem: [https://search.imagej.net https://search.imagej.net]
 
* Search for stuff in our ecosystem: [https://search.imagej.net https://search.imagej.net]
* [https://github.com/imagej/presentations/blob/gh-pages/2018-06-05-dais-learnathon/SciJava%20and%20ImageJ%20Ops.ipynb SciJava and ImageJ Ops Jupyter notebook / slides]
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* [https://github.com/fiji/learnathon-2018/blob/master/SciJava%20and%20ImageJ%20Ops.ipynb SciJava and ImageJ Ops Jupyter notebook / slides]
 
* [http://imagej.github.io/presentations/2017-06-19-dais-learnathon/ Slides from last year's Learnathon about SciJava community]
 
* [http://imagej.github.io/presentations/2017-06-19-dais-learnathon/ Slides from last year's Learnathon about SciJava community]
 
* [https://imagej.net/Developing_ImageJ_in_Eclipse Developing ImageJ in Eclipse]
 
* [https://imagej.net/Developing_ImageJ_in_Eclipse Developing ImageJ in Eclipse]
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=== ClearVolume and BDV VisTools===
 
=== ClearVolume and BDV VisTools===
* [[Media:Jug_BigDataAnd3dViz.pdf|Slides]]
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* [https://github.com/fiji/learnathon-2018/blob/master/Jug_BigDataAnd3dViz.pdf Slides]
 
* Repositories to be cloned:
 
* Repositories to be cloned:
 
** <code>https://github.com/fjug/TutorialClearVolume.git</code>
 
** <code>https://github.com/fjug/TutorialClearVolume.git</code>
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=== scenery & SciView ===
 
=== scenery & SciView ===
* Slides: [https://ulrik.is/sharing-a-file-named/dais-learnathon-2018-scenery-sciview.pdf pdf] / [https://ulrik.is/sharing-a-file-named/dais-learnathon-2018-scenery-sciview.zip zipped keynote]
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* [https://ulrik.is/sharing-a-file-named/dais-learnathon-2018-scenery-sciview.pdf Slides] / [https://ulrik.is/sharing-a-file-named/dais-learnathon-2018-scenery-sciview.zip zipped keynote]
 
* Repositories to be cloned:
 
* Repositories to be cloned:
 
** <code>https://github.com/skalarproduktraum/sciview-tutorial.git</code>
 
** <code>https://github.com/skalarproduktraum/sciview-tutorial.git</code>

Latest revision as of 04:03, 13 June 2019

The second DAIS Learnathon took place from June 3 until June 9 2018.
This page is the Learnathon Wiki page of last year's event!

Schedule

See this page!

Setting up your system

Check if you have this set up:

  • Eclipse (Neon)
  • bash / zsh
  • GIT
  • Maven
  • Gitter

Monday

Intro session...

See slides!

Start a Maven project with Eclipse

See slides

Git repos to clone:

  • git@github.com:imagej/example-imagej-command.git

Notes: In case you want to switch to the legacy UI (ImageJ 1), you change the dependencies section in your POM to...

<dependencies>
	<dependency>
		<groupId>net.imagej</groupId>
		<artifactId>imagej</artifactId>
	</dependency>
	<dependency>
		<groupId>net.imagej</groupId>
		<artifactId>imagej-legacy</artifactId>
	</dependency>
</dependencies>

Introduction to ImgLib2

Git repos to clone:

(Slides are contained in the repository.)


Tuesday

ImageJ2 and SciJava

ImageJ2 Ops

ImageJ Legacy

The ImageJ Legacy Course covered the topics: images, tables, regions of interest and command execution.

Jupyter Notebooks

Git

  • See the Git page!

Wednesday

KNIME Usage

  • Download and install the KNIME Analytics Platform from here

KNIME Development Introduction

Developing ImageJ Ops

ImageJ Server

Thursday

ClearVolume and BDV VisTools

scenery & SciView

KNIME ImageJ2 Integration

Friday

Imglib2 Algorithm

Imglib2 Advanced