Difference between revisions of "Image Processing School Pilsen 2009"

(Fiji School schedule)
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Revision as of 10:40, 12 August 2009

See also the Image Processing School announcement webpage.

Schedule (tentative):


Wednesday, September 9th

Welcome and Introduction

9:30 - 10:00 AM


Session 1

10:00 - 11:00 AM

Setup: installing Fiji and getting familiar with it; overview of major features.

Lead instructor: Johannes Schindelin

Session 1

11:30 - 12:30 AM

Fundamentals of image processing: anatomy of a digital image, image formats

Lead instructor: Albert Cardona

Session 3

14:00 - 15:30

???

Session 4

16:00 - 17:30

Free session for students to introduce their image processing interests to the instructors.

Lead instructor: Albert Cardona


Other days

Session ?

Fundamentals of image acquisition: effects of dynamic range and exposure, etc


Lead instructor: Albert Cardona or ?


Session ?

Image analysis: Colocalization

Lead instructor: Dan White


Session ?

Image analysis: measurements

Lead instructor: Dan White


Session ?

Image registration: Virtual Stack Slice Registration, TrakEM2, bUnwarpJ


Lead instructor: Ignacio Arganda


Session ?

Introduction to image segmentation.

  • Pixel-based and vector-based.
  • Manual and semi-automatic.

Plugins: Simple Neurite Tracer, Segmentation Editor, VIB protocol, TrakEM2, Level Sets.

Lead instructor: Verena Kaynig


Session ?

TrakEM2: image registration and manual segmentation.

Lead instructor: Albert Cardona


Session ?

Introduction to Fiji scripting in Python

Lead instructor: Johannes Schindelin


Session ?

Advanced Fiji scripting in Python

Lead instructors: Jean-Yves Tinevez


Session ?

Introduction to Fiji programming in Java

Lead instructor: Johannes Schindelin