ImageJ2 Python Scripts

Revision as of 12:03, 4 December 2016 by Hadim (talk | contribs)



This page is a primer of ImageJ2 only Python scripts. It means that the examples included here avoid IJ1 as much as possible, unless it's really necessary.

Note that all the scripts of this page are links from


Stack Projection

Apply Threshold

Crop an image

Rotate all the frames of a stack

Subtract a stack to its first image

Apply DOG Filter

Apply a mask

Retrieve objects/particles from a mask