ImageJ2 Python Scripts

Revision as of 12:03, 4 December 2016 by Hadim (talk | contribs)

Template:Scripting

Introduction

This page is a primer of ImageJ2 only Python scripts. It means that the examples included here avoid IJ1 as much as possible, unless it's really necessary.

Note that all the scripts of this page are links from https://github.com/imagej/imagej-scripting/tree/master/src/main/resources/script_templates/ImageJ2.

Scripts

Stack Projection


Apply Threshold



Crop an image


Rotate all the frames of a stack


Subtract a stack to its first image


Apply DOG Filter


Apply a mask


Retrieve objects/particles from a mask



Resources