Find Peaks

Revision as of 16:26, 23 February 2014 by Tiago (talk | contribs) (First draft)
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Find Peaks (ImageJ/Fiji)
Author Tiago Ferreira
Maintainer Tiago Ferreira
File Find_Peaks.bsh
Source on GitHub
Initial release February 2014
Development status Experimental
Category Analysis, Scripting, Plugins


A BeanShell script that retrieves local maxima and minima from an ImageJ plot.


Description

TO BE DONE.

Installation

Download Find_Peaks.bsh and place it in the plugins/ folder using the Plugins▷ Install... command.

Usage

Peak amplitude
TO BE DONE.
Min. value of maxima
TO BE DONE.
Max. value of minima
TO BE DONE.
Min. peak distance
The smallest separation between peaks (in X-axis units). When this value is not zero, smaller peaks that occur within the specified vicinity will be ignored. This works in the following way: 1) Identified peaks that fulfill all criteria above are sorted in descending order; 2) Beginning with the largest peak, the script ignores all remaining peaks that are not separated by more than Min. peak distance.
Min. peak distance
TO BE DONE.
Exclude peaks on edges of plot
TO BE DONE.

Notes

TO BE DONE.

Related Links

TO BE DONE.

License

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.