Difference between revisions of "File:Simple-Neurite-Tracer.jpg"

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[http://homepages.inf.ed.ac.uk/s9808248/imagej/tracer/ Simple Neurite Tracer] from Mark Longair, showing a traced secondary lineage of a third instar larva  <i>Drosophila</i> brain.
 
[http://homepages.inf.ed.ac.uk/s9808248/imagej/tracer/ Simple Neurite Tracer] from Mark Longair, showing a traced secondary lineage of a third instar larva  <i>Drosophila</i> brain.
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The plugin GUI (left) guides the user into creating paths semiautomatically, by clicking starting and ending points throughout the stack. Any ending point serves as starting point for a new segment of the same trace, unless the trace is declared complete.
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In the center, the image stack is depicted simulateously in XY, ZX and YZ views.
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On the right, the ongoing tracing is shown in the context of the 3D volume view of the stack (via [[3D Viewer]] plugin). From the [[3D Viewer]], traces can be exported as meshes in wavefront or DXF formats for further processing in 3D applications like [http://www.blender.org Blender].

Latest revision as of 05:53, 16 October 2008

Simple Neurite Tracer

Simple Neurite Tracer from Mark Longair, showing a traced secondary lineage of a third instar larva Drosophila brain.

The plugin GUI (left) guides the user into creating paths semiautomatically, by clicking starting and ending points throughout the stack. Any ending point serves as starting point for a new segment of the same trace, unless the trace is declared complete.

In the center, the image stack is depicted simulateously in XY, ZX and YZ views.

On the right, the ongoing tracing is shown in the context of the 3D volume view of the stack (via 3D Viewer plugin). From the 3D Viewer, traces can be exported as meshes in wavefront or DXF formats for further processing in 3D applications like Blender.

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Date/TimeThumbnailDimensionsUserComment
current10:46, 15 October 2008Thumbnail for version as of 10:46, 15 October 20081,393 × 715 (237 KB)Albertcardona (talk | contribs)[http://homepages.inf.ed.ac.uk/s9808248/imagej/tracer/ Simple Neurite Tracer] from Mark Longair, showing a traced secondary lineage of a third instar larva <i>Drosophila</i> brain.
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