Difference between revisions of "Fiji"

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{{FijiMenu}}[http://fiji.sc/ Fiji] is an image processing package—a "batteries-included" distribution of [[ImageJ]], bundling a lot of plugins which facilitate scientific image analysis.
<seo title="Fiji is just ImageJ - batteries included" metak="fiji,imagej,java,image processing"/>
 
  
<fijirandomsnapshot/>
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* '''[[Fiji Usage|For users]]''' - Fiji is [[Fiji/Downloads|easy to install]] and has an automatic update function, bundles a [[:Category:Plugins|lot of plugins]] and offers comprehensive [[documentation]].
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* '''[[Developing Fiji|For developers]]''' - Fiji is an open source project hosted in a [[Git]] version control {{GitHub|repo=fiji|label=repository}}, with access to the source code of all internals, libraries and plugins, and eases the [[Development|development]] and [[Scripting Help|scripting]] of plugins.
  
[[About|Fiji]] is an image processing package. It can be described as a "batteries-included" distribution of [[ImageJ]] (and [[ImageJ2]]), bundling Java, Java3D and a lot of [[plugins]] organized into a [[Plugins Menu|coherent menu structure]]. Fiji compares to ImageJ as Ubuntu compares to Linux.
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== Downloads ==
 
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{{DownloadFiji}}
The main focus of Fiji is to assist research in life sciences.
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See the [[Fiji/Downloads|Fiji Downloads]] page for Life-Line versions, etc.
 
 
* '''[[Fiji Usage|For users]]''' - Fiji is [[Downloads|easy to install]] and has an automatic update function, bundles a [[:Category:Plugins|lot of plugins]] and offers comprehensive [[documentation]].
 
* '''[[Developing_Fiji|Developing Fiji]]''' - Fiji is an open source project hosted in a [[Git]] version control {{GitHub|repo=fiji|label=repository}}, with access to the source code of all internals, libraries and plugins, and eases the [[Development|development]] and [[Scripting Help|scripting]] of plugins.
 
 
 
<b>[[Downloads#Fiji|Download Fiji now]]</b>&nbsp;&nbsp;[[Image:Yada.png|middle|link=Downloads#Fiji]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<b>[[List_of_update_sites|List of Update sites]]</b>
 
 
 
<b>[[How to cite Fiji?|How to cite Fiji?]]</b>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[http://scholar.google.com/scholar?as_sdt=0,5&hl=en&scisbd=1&sciodt=0,5&cites=17249863664147333646&scipsc= Who is citing Fiji?]
 
 
 
<div style="clear: right">&nbsp;</div>
 
 
 
<div style="float: right; width: 55%; padding-left: 20px">
 
== Collaboration ==
 
 
 
The Fiji project is driven by a strong desire to improve the tools available for life sciences to process and analyze data. To this end, Fiji collaborates closely with the following projects:
 
<center>
 
{|
 
| style="padding-left: 5px; padding-right: 5px" | [[File:imagej2-icon.png|64px]]
 
| style="padding-left: 5px; padding-right: 5px" | [[File:bio-formats-icon.png|64px]]
 
| style="padding-left: 5px; padding-right: 5px" | [[File:ome-icon.png|64px]]
 
| style="padding-left: 5px; padding-right: 5px" | [[File:mm-icon.jpg|64px]]
 
| style="padding-left: 5px; padding-right: 5px" | [[File:knime-icon.png|64px]]
 
|-
 
![[ImageJ2]]
 
![[Bio-Formats]]
 
![[OME]]
 
![[Micro-Manager|µManager]]
 
![[KNIME]]
 
|}
 
</center>
 
</div>
 
 
 
== [[News]] ==
 
<listnews/>
 
 
 
[[Special:NewsChannel|Subscribe]] to an RSS or Atom feed of the [[News|Fiji news]].
 
  
Browse the [[:Category:News|news archive]].
 
 
== Downloads ==
 
{{DownloadLatestFiji}}
 
See the [[Downloads]] page for Life-Line versions, etc.
 
{{FijiDocsMenu}}
 
 
== License ==
 
== License ==
  
Fiji is released as [[open source]] under the [http://www.gnu.org/licenses/gpl.html GNU General Public License].
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Fiji is released as [[open source]] under the [[GPL|GNU General Public License]].
 
 
Fiji builds on top of the [[ImageJ2]] core, which is licensed under the permissive [http://opensource.org/licenses/BSD-2-Clause BSD 2-Clause license].
 
 
 
Plugins and other components have their own {{GitHub|repo=fiji|path=LICENSES|label=licenses}}.
 
  
== Help ==
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Fiji builds on top of the [[ImageJ2]] core, which is licensed under the permissive [[BSD|BSD 2-Clause license]].
  
* [[Documentation]]
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Plugins and other components have {{GitHub|repo=fiji|path=LICENSES|label=their own licenses}}.
* [[Getting started]]
 
* [[:Category:Tutorials|Tutorials]]
 
* [[Report a Bug]]
 
* [[Help#Getting help with ImageJ|Contact]]
 
  
See also the sidebar on the right.
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See the [[Licensing]] page for details.
  
 
== Contributing ==
 
== Contributing ==
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Fiji is supported by several laboratories and institutions:
 
Fiji is supported by several laboratories and institutions:
  
* [http://www.loci.wisc.edu/ LOCI] in Madison, Wisconsin, USA, home of [[ImageJ2]] and [[Bio-Formats]].
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* The [[LOCI|Eliceiri/LOCI]] lab at [https://wisc.edu/ UW-Madison], home of [[ImageJ2]].
* [http://www.mpi-cbg.de/research/research-groups/pavel-tomancak.html The Tomancak Laboratory] in Dresden, Germany.
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* The [https://www.mpi-cbg.de/research-groups/current-groups/pavel-tomancak/research-focus/ Tomancak] and [https://www.mpi-cbg.de/jug Jug] labs at [[MPI-CBG]] and the [[CSBD]].
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* The [https://www.janelia.org/lab/saalfeld-lab Saalfeld Lab] at [https://www.janelia.org/ Janelia Research Campus].
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* Individuals at [[Contributors|many other institutions worldwide]].
  
See the [[Contributors]] page for a complete list.
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Fiji is an [[open source]] project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork.
  
Fiji is an [[Open Source]] project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork.
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If you'd like to share an idea or project, please [[Contact|share them with the community]].
  
If you'd like to share any idea or project with us, please contact us via the [[Mailing Lists|mailing list]] or via [[IRC]].
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== Publication ==
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* {{Publication | Fiji}}
  
[[Category:Software]]
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[[Category:Fiji]]
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[[Category:Related Software]]
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[[Category:Citable]]

Latest revision as of 10:34, 27 July 2019

Fiji-icon.png Fiji Is Just ImageJ
Overview
Using Fiji
Featured Fiji Projects
Fiji Publications
Links
Developing Fiji
Building Fiji from source
Developing Fiji
Contribution requirements

Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.

Downloads

Yada.png ~ Download Fiji for your OS ~ Yada.png
Windows (64-bit)
64-bit
macOS
macOS
Linux (64-bit)
64-bit
Other downloads
Windows (32-bit) 32-bit All platforms (no JRE) No JRE Linux (32-bit) 32-bit

See the Fiji Downloads page for Life-Line versions, etc.

License

Fiji is released as open source under the GNU General Public License.

Fiji builds on top of the ImageJ2 core, which is licensed under the permissive BSD 2-Clause license.

Plugins and other components have their own licenses.

See the Licensing page for details.

Contributing

Fiji is supported by several laboratories and institutions:

Fiji is an open source project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork.

If you'd like to share an idea or project, please share them with the community.

Publication