Difference between revisions of "Citing"

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* For information on who ''maintains'' these projects, see [[Governance]].
 
* For information on who ''maintains'' these projects, see [[Governance]].
 
* For information on how ImageJ projects are ''funded'', see [[Funding]].}}
 
* For information on how ImageJ projects are ''funded'', see [[Funding]].}}
 +
{{AboutMenu}}== Guidelines ==
  
You can cite various ImageJ-related projects as follows:
+
We ask users to cite:
 +
 
 +
# Any [[:Category:Citable|specific publications]] of [[plugins]] used.
 +
# The general paper of ImageJ distribution(s) used—e.g., if you used [[Fiji]], cite the [[Fiji]] paper.
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# The general [[ImageJ]] paper.
 +
 
 +
If journal reference limits interfere, the plugin-specific publications should take precedence.
 +
 
 +
In general, please cite these projects—their long-term future depends on it!
 +
 
 +
Thank you for your support.
 +
 
 +
== Publications to cite ==
  
 
{| class="wikitable"
 
{| class="wikitable"
 +
| '''Logo'''
 
| '''Project'''
 
| '''Project'''
 
| '''Citation'''
 
| '''Citation'''
| '''Google Scholar'''
 
 
|-
 
|-
| [[ImageJ]]
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! colspan=3 | Core projects
| {{Citation | last = Schneider | first = C. A.
 
| last2 = Rasband | first2 = W. S.
 
| last3 = Eliceiri | first3 = K. W.
 
| year = 2012
 
| journal = Nature methods
 
| url = http://www.nature.com/nmeth/journal/v9/n7/full/nmeth.2089.html
 
| title = NIH Image to ImageJ: 25 years of image analysis
 
| volume = 9(7)
 
| pages = 671-675
 
| pmid = 22930834}}.
 
| {{Scholar | cluster=1774858333144211891}}
 
 
|-
 
|-
 +
| {{Logo | ImageJ2}}
 
| [[ImageJ2]]
 
| [[ImageJ2]]
| {{Citation | last = Schindelin | first = J.
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| {{Publication | ImageJ2}}
| last2 = Rueden | first2 = C. T.
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|-
| last3 = Hiner | first3 = M. C.
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| {{Logo | ImageJ1}}
| last4 = Eliceiri | first4 = K. W.
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| [[ImageJ 1.x]]
| year = 2015
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| {{Publication | ImageJ}}
| journal = Molecular Reproduction and Development
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|-
| url = http://onlinelibrary.wiley.com/doi/10.1002/mrd.22489/full
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! colspan=3 | Distributions of ImageJ
| title = The ImageJ ecosystem: An open platform for biomedical image analysis
 
| volume =
 
| pages =
 
| pmid = 26153368}}.
 
| {{Scholar | cluster=2492786182850473580}}
 
 
|-
 
|-
 +
| {{Logo | Fiji}}
 
| [[Fiji]]
 
| [[Fiji]]
| {{Citation | last = Schindelin | first = J.
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| {{Publication | Fiji}}
| last2 = Arganda-Carreras | first2 = I.
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|-
| last3 = Frise | first3 = E.
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| {{Logo | BoneJ}}
| last4 = Kaynig | first4 = V.
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| [[BoneJ]]
| last5 = Longair | first5 = M.
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| {{Publication | BoneJ}}
| last6 = Pietzsch | first6 = T.
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|-
| last7 = Preibisch | first7 = S.
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| {{Logo | Bio7}}
| last8 = Rueden | first8 = C.
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| [[Bio7]]
| last9 = Saalfeld | first9 = S.
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| {{Publication | Bio7}}
| last10 = Schmid | first10 = B.
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|-
| last11 = Tinevez | first11 = J.-Y.
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! colspan=3 | Supporting libraries
| last12 = White | first12 = D. J.
 
| last13 = Hartenstein | first13 = V.
 
| last14 = Eliceiri | first14 = K.
 
| last15 = Tomancak | first15 = P.
 
| last16 = Cardona | first16 = A.
 
| year = 2012
 
| journal = Nature methods
 
| url = http://www.nature.com/nmeth/journal/v9/n7/full/nmeth.2019.html
 
| title = Fiji: an open-source platform for biological-image analysis
 
| volume = 9(7)
 
| pages = 676-682
 
| pmid = 22743772}}.
 
| {{Scholar | cluster=17249863664147333646}}
 
 
|-
 
|-
 +
| {{Logo | ImgLib2}}
 
| [[ImgLib2]]
 
| [[ImgLib2]]
| {{Citation | last = Pietzsch | first = T.
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| {{Publication | ImgLib2}}
| last2 = Preibisch | first2 = S.
 
| last3 = Tomancak | first3 = P.
 
| last4 = Saalfeld | first4 = S.
 
| year = 2012
 
| journal = Bioinformatics
 
| url = http://bioinformatics.oxfordjournals.org/content/28/22/3009.full
 
| title = ImgLib2—generic image processing in Java
 
| volume = 28(22)
 
| pages = 3009-3011
 
| pmid = 22962343}}.
 
| {{Scholar | cluster=17114668151840635304}}
 
|-
 
| colspan=3 style="background: #777" |
 
 
|-
 
|-
| [[SciJava Common]]
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| {{Logo|SciJava}}
| Rueden, C., Schindelin, J., Hiner, M. & Eliceiri, K. (2015). SciJava Common [Software]. http://scijava.org/.
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| style="white-space: nowrap" | [[SciJava Common]]
| -
+
| {{Publication | SciJava Common}}
 
|-
 
|-
 +
| {{Logo | SCIFIO}}
 
| [[SCIFIO]]
 
| [[SCIFIO]]
| Hiner, M., Rueden, C. & Eliceiri, K. (2015). SCIFIO [Software]. http://scif.io/.
+
| {{Publication | SCIFIO}}
| -
 
 
|-
 
|-
| [[ImageJ OPS]]
+
| {{Logo | ImageJ}}
| Rueden, C., Dietz, C., Horn, M., Schindelin, J., Northan, B., Berthold, M. & Eliceiri, K. (2015). ImageJ OPS [Software]. http://imagej.net/OPS.
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| [[ImageJ Ops]]
| -
+
| {{Publication | ImageJ Ops}}
 
|-
 
|-
 
| colspan=3 style="background: #777" |
 
| colspan=3 style="background: #777" |
 
|-
 
|-
| Other
 
| Browse the [[:Category:Citable|list of citable software]] and [[Publications|publications using Fiji]] for additional citation information.
 
| -
 
 
|}
 
|}
 +
See the [[:Category:Citable|list of citable software]] and [[Fiji/Publications|publications using Fiji]] for additional citation information.

Latest revision as of 11:48, 29 November 2017



About
ImageJ
Usage
Contributors
Governance
Funding
Citing
Contributing
Wish list

Guidelines

We ask users to cite:

  1. Any specific publications of plugins used.
  2. The general paper of ImageJ distribution(s) used—e.g., if you used Fiji, cite the Fiji paper.
  3. The general ImageJ paper.

If journal reference limits interfere, the plugin-specific publications should take precedence.

In general, please cite these projects—their long-term future depends on it!

Thank you for your support.

Publications to cite

Logo Project Citation
Core projects
Imagej2-icon.png ImageJ2 Rueden, C. T.; Schindelin, J. & Hiner, M. C. et al. (2017), "ImageJ2: ImageJ for the next generation of scientific image data", BMC Bioinformatics 18:529, doi:10.1186/s12859-017-1934-z, <https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1934-z>.
Imagej1-icon.png ImageJ 1.x Schneider, C. A.; Rasband, W. S. & Eliceiri, K. W. (2012), "NIH Image to ImageJ: 25 years of image analysis", Nature methods 9(7): 671-675, PMID 22930834, <http://www.nature.com/nmeth/journal/v9/n7/full/nmeth.2089.html> (on Google Scholar).
Distributions of ImageJ
Fiji-icon.png Fiji Schindelin, J.; Arganda-Carreras, I. & Frise, E. et al. (2012), "Fiji: an open-source platform for biological-image analysis", Nature methods 9(7): 676-682, PMID 22743772, doi:10.1038/nmeth.2019, <http://www.nature.com/nmeth/journal/v9/n7/full/nmeth.2019.html> (on Google Scholar).
Bonej-icon.png BoneJ Doube, M.; Kłosowski, M. M. & Arganda-Carreras, I. et al. (2010), "BoneJ: Free and extensible bone image analysis in ImageJ", Bone 47(6): 1076-1079, PMID 20817052, <http://www.sciencedirect.com/science/article/pii/S8756328210014419> (on Google Scholar).
Bio7-icon.png Bio7 Austenfeld, M. & Beyschlag, W. (2012), "A Graphical User Interface for R in a Rich Client Platform for Ecological Modeling.", Journal of Statistical Software 49(4): 1-19, <https://www.jstatsoft.org/article/view/v049i04> (on Google Scholar).
Supporting libraries
Imglib2-icon.png ImgLib2 Pietzsch, T.; Preibisch, S. & Tomancak, P. et al. (2012), "ImgLib2—generic image processing in Java", Bioinformatics 28(22): 3009-3011, PMID 22962343, <http://bioinformatics.oxfordjournals.org/content/28/22/3009.full> (on Google Scholar).
Scijava-icon.png SciJava Common Rueden, C., Schindelin, J., Hiner, M. & Eliceiri, K. (2016). SciJava Common [Software]. http://scijava.org/.
Scifio-icon.png SCIFIO Hiner, M.C.; Rueden, C.T. & Eliceiri, K.W. (2016 Dec 7), "SCIFIO: an extensible framework to support scientific image formats.", BMC Bioinformatics 17(1): 521, PMID 27927161, doi:10.1186/s12859-016-1383-0, <https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1383-0> (on Google Scholar).
Imagej2-icon.png ImageJ Ops Rueden, C., Dietz, C., Horn, M., Schindelin, J., Northan, B., Berthold, M. & Eliceiri, K. (2016). ImageJ Ops [Software]. http://imagej.net/Ops.

See the list of citable software and publications using Fiji for additional citation information.