Difference between revisions of "BoneJ"

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{{Infobox
 
{{Infobox
| name                  = BoneJ
+
| name                  = BoneJ 1.x
 
| software              = ImageJ
 
| software              = ImageJ
 
| logo                    = [[File:Bonej-icon.png|96px]]
 
| logo                    = [[File:Bonej-icon.png|96px]]
| author                = {{Person|Michaeldoube}}
+
| author                = {{Person|Mdoube}}
| maintainer            = {{Person|Michaeldoube}}
+
| maintainer            = {{Person|Mdoube}}
 
| source                = {{GitHub|org=mdoube|repo=BoneJ}}
 
| source                = {{GitHub|org=mdoube|repo=BoneJ}}
 
| status                = Active
 
| status                = Active

Revision as of 21:28, 1 October 2018

Bonej-icon.png
BoneJ 1.x (ImageJ)
Author Mdoube
Maintainer Mdoube
Source on GitHub
Development status Active
Website http://bonej.org/

BoneJ is a plugin for bone image analysis in ImageJ. It provides free, open source tools for trabecular geometry and whole bone shape analysis.

Experimental release

There's a new modernized version of BoneJ available through the ImageJ updater. Read more about BoneJ experimental.

Installation

Imagej1-icon.png BoneJ was designed to work with plain ImageJ 1.x.

Fiji-icon.png BoneJ can be installed into Fiji, but you must use the Java-6 version of Fiji, not the current Java-8 version:

  • Download the final Java-6 version of Fiji labeled “2017 May 30” from here.
  • Unpack it somewhere beneath your home folder.
  • Download and install BoneJ_.jar into that installation's plugins folder.
  • Launch Fiji and run Plugins  › 3D Viewer to trigger installation of the 3D Viewer.
  • Restart Fiji.

For technical details about ImageJ and Fiji using Java 6 vs. Java 8, see the Java 8 page.

BoneJ and pQCT

BoneJ and pQCT plug-ins are in the process of separation. The latter have their own update site, and they don't need BoneJ to work. However, if you download BoneJ_.jar from http://bonej.org/ it still includes older versions of the pQCT tools.

Publication