BigStitcher Select illumination

Revision as of 11:18, 7 December 2017 by BigStitcher (talk | contribs)

When views have more than one illumination, you can select the best one by selecting the views you wish to process and clicing Preprocessing ▶ Select Best Illuminations in the right-click menu.

  • Ticking Process only selection will limit the illumination selection to the views currently selected in the main window. Select which views should be processed and if you want to review the selections before applying.
  • In the Selection method you can choose by which method the best illumination is determined. At the moment, tho only option is selection of the brightest (highest mean intensity) view.
BigStitcher Illu 1.png
  • If the Show selection results before applying option was selected a new window showing the assigned illumination for all selected views will appear. The selected illumination can be manually changed for each view by changing the Illumination attribute in the list.
BigStitcher Illu 2.png

After selecting the best illumination, only the chosen illumination will be used for the stitching and will appear in the BigDataViewer.

BigStitcher Illu 3.png

Go back to the main page