2018-06 - DAIS learnathon

The second DAIS Learnathon took place from June 3 until June 9 2018.
This page is the Learnathon Wiki page of last years event!

Schedule

See this page!

Setting up your system

Check if you have this set up:

  • Eclipse (Neon)
  • bash / zsh
  • GIT
  • Maven
  • Gitter

Monday

Intro session...

See slides!

Start a Maven project with Eclipse

Slides online:

Git repos to clone:

  • git@github.com:imagej/example-imagej-command.git

Notes: In case you want to switch to the legacy UI (ImageJ 1), you change the dependencies section in your POM to...

<dependencies>
	<dependency>
		<groupId>net.imagej</groupId>
		<artifactId>imagej</artifactId>
	</dependency>
	<dependency>
		<groupId>net.imagej</groupId>
		<artifactId>imagej-legacy</artifactId>
	</dependency>
</dependencies>

Introduction to ImgLib2

Git repos to clone:

(Slides are contained in the repository.)


Tuesday

ImageJ2 and SciJava

ImageJ2 Ops

ImageJ Legacy

The ImageJ Legacy Course covered the topics: images, tables, regions of interest and command execution.

Jupyter Notebooks

Git

  • See the Git page!

Wednesday

KNIME Usage

  • Download and install the KNIME Analytics Platform from here

KNIME Development Introduction

Developing ImageJ Ops

ImageJ Server

Thursday

ClearVolume and BDV VisTools

scenery & SciView

KNIME ImageJ2 Integration

Friday

Imglib2 Algorithm

Imglib2 Advanced