Serialized Form (ImageJ API)

Package ij

Class ij.ImageJ extends java.awt.Frame implements Serializable

Serialized Fields

actionPerformedTime
```
long actionPerformedTime
```
applet
```
java.applet.Applet applet
```
classes
```
java.util.Vector classes
```
embedded
```
boolean embedded
```
exitWhenQuitting
```
boolean exitWhenQuitting
```
firstTime
```
boolean firstTime
```
hotkey
```
boolean hotkey
```
keyPressedTime
```
long keyPressedTime
```
lastKeyCommand
```
java.lang.String lastKeyCommand
```
progressBar
```
ProgressBar progressBar
```
quitMacro
```
boolean quitMacro
```
quitting
```
boolean quitting
```
statusBar
```
java.awt.Panel statusBar
```
statusLine
```
javax.swing.JLabel statusLine
```
toolbar
```
Toolbar toolbar
```
windowClosed
```
boolean windowClosed
```

Class ij.ImageJApplet extends java.applet.Applet implements Serializable

Package ij.gui

Class ij.gui.Arrow extends Line implements Serializable

Serialized Fields

doubleHeaded
```
boolean doubleHeaded
```
headShaftRatio
```
double headShaftRatio
```
headSize
```
double headSize
```
outline
```
boolean outline
```
path
```
java.awt.geom.GeneralPath path
```
points
```
float[] points
```
style
```
int style
```

Class ij.gui.EllipseRoi extends PolygonRoi implements Serializable
- Serialized Fields
  - aspectRatio
```
double aspectRatio
```
  - handle
```
int[] handle
```
  - xstart
```
double xstart
```
  - ystart
```
double ystart
```
Class ij.gui.FreehandRoi extends PolygonRoi implements Serializable

Class ij.gui.GenericDialog extends java.awt.Dialog implements Serializable

Serialized Fields

addToSameRow
```
boolean addToSameRow
```
addToSameRowCalled
```
boolean addToSameRowCalled
```
bottomInset
```
int bottomInset
```
c
```
java.awt.GridBagConstraints c
```
cancel
```
java.awt.Button cancel
```
cbIndex
```
int cbIndex
```
centerDialog
```
boolean centerDialog
```
checkbox
```
java.util.Vector checkbox
```
choice
```
java.util.Vector choice
```
choiceIndex
```
int choiceIndex
```
customInsets
```
boolean customInsets
```
defaultChoiceIndexes
```
java.util.Vector defaultChoiceIndexes
```
defaultStrings
```
java.util.Vector defaultStrings
```
defaultText
```
java.util.Vector defaultText
```
defaultValues
```
java.util.Vector defaultValues
```
dialogListeners
```
java.util.Vector dialogListeners
```
echoChar
```
char echoChar
```
errorMessage
```
java.lang.String errorMessage
```
firstNumericField
```
boolean firstNumericField
```
firstPaint
```
boolean firstPaint
```
firstSlider
```
boolean firstSlider
```
fontSizeSet
```
boolean fontSizeSet
```
help
```
java.awt.Button help
```
helpLabel
```
java.lang.String helpLabel
```
helpURL
```
java.lang.String helpURL
```
hideCancelButton
```
boolean hideCancelButton
```
imagePanels
```
java.util.Vector imagePanels
```
invalidNumber
```
boolean invalidNumber
```
labels
```
java.util.Hashtable labels
```
lastLabelAdded
```
java.awt.Label lastLabelAdded
```
leftInset
```
int leftInset
```
macro
```
boolean macro
```
macroOptions
```
java.lang.String macroOptions
```
nfIndex
```
int nfIndex
```
no
```
java.awt.Button no
```
numberField
```
java.util.Vector numberField
```
okay
```
java.awt.Button okay
```
optionsRecorded
```
boolean optionsRecorded
```
pfr
```
PlugInFilterRunner pfr
```
previewCheckbox
```
java.awt.Checkbox previewCheckbox
```
previewLabel
```
java.lang.String previewLabel
```
radioButtonGroups
```
java.util.Vector radioButtonGroups
```
radioButtonIndex
```
int radioButtonIndex
```
recorderOn
```
boolean recorderOn
```
sfIndex
```
int sfIndex
```
showDialogCalled
```
boolean showDialogCalled
```
slider
```
java.util.Vector slider
```
sliderDigits
```
java.util.Vector sliderDigits
```
sliderIndexes
```
java.util.Vector sliderIndexes
```
sliderScales
```
java.util.Vector sliderScales
```
smartRecording
```
boolean smartRecording
```
stringField
```
java.util.Vector stringField
```
textArea1
```
java.awt.TextArea textArea1
```
textArea2
```
java.awt.TextArea textArea2
```
textAreaIndex
```
int textAreaIndex
```
theLabel
```
java.awt.Component theLabel
```
topInset
```
int topInset
```
wasCanceled
```
boolean wasCanceled
```
wasOKed
```
boolean wasOKed
```
windowIDs
```
int[] windowIDs
```
windowTitles
```
java.lang.String[] windowTitles
```

Class ij.gui.HistogramWindow extends ImageWindow implements Serializable

Serialized Fields

bgThread
```
java.lang.Thread bgThread
```
blankLabel
```
java.lang.String blankLabel
```
cal
```
Calibration cal
```
col1
```
int col1
```
col2
```
int col2
```
copy
```
java.awt.Button copy
```
count
```
java.awt.Label count
```
decimalPlaces
```
int decimalPlaces
```
digits
```
int digits
```
doUpdate
```
boolean doUpdate
```
font
```
java.awt.Font font
```
frame
```
java.awt.Rectangle frame
```
histogram
```
long[] histogram
```
list
```
java.awt.Button list
```
live
```
java.awt.Button live
```
log
```
java.awt.Button log
```
logScale
```
boolean logScale
```
lut
```
LookUpTable lut
```
newMaxCount
```
long newMaxCount
```
plotScale
```
int plotScale
```
rgb
```
java.awt.Button rgb
```
rgbMode
```
int rgbMode
```
row1
```
int row1
```
row2
```
int row2
```
row3
```
int row3
```
row4
```
int row4
```
row5
```
int row5
```
save
```
java.awt.Button save
```
showBins
```
boolean showBins
```
srcImageID
```
int srcImageID
```
srcImp
```
ImagePlus srcImp
```
stackHistogram
```
boolean stackHistogram
```
stats
```
ImageStatistics stats
```
value
```
java.awt.Label value
```
yMax
```
int yMax
```

Class ij.gui.HTMLDialog extends javax.swing.JDialog implements Serializable
- Serialized Fields
  - editorPane
```
javax.swing.JEditorPane editorPane
```
  - escapePressed
```
boolean escapePressed
```
  - modal
```
boolean modal
```

Class ij.gui.ImageCanvas extends java.awt.Canvas implements Serializable

Serialized Fields

currentRoi
```
Roi currentRoi
```
customRoi
```
boolean customRoi
```
defaultColor
```
java.awt.Color defaultColor
```
disablePopupMenu
```
boolean disablePopupMenu
```
drawNames
```
boolean drawNames
```
dstHeight
```
int dstHeight
```
dstWidth
```
int dstWidth
```
firstFrame
```
long firstFrame
```
flags
```
int flags
```
flattening
```
boolean flattening
```
font
```
java.awt.Font font
```
fps
```
int fps
```
frames
```
int frames
```
hideZoomIndicator
```
boolean hideZoomIndicator
```
ij
```
ImageJ ij
```
imageHeight
```
int imageHeight
```
imageUpdated
```
boolean imageUpdated
```
imageWidth
```
int imageWidth
```
imp
```
ImagePlus imp
```
labelRects
```
java.awt.Rectangle[] labelRects
```
lastZoomSX
```
int lastZoomSX
```
Screen coordinates where the last zoom operation was done (initialized to impossible value)
lastZoomSY
```
int lastZoomSY
```
magnification
```
double magnification
```
maxBoundsReset
```
boolean maxBoundsReset
```
mouseExited
```
boolean mouseExited
```
mousePressedTime
```
long mousePressedTime
```
mousePressedX
```
int mousePressedX
```
mousePressedY
```
int mousePressedY
```
offScreenHeight
```
int offScreenHeight
```
offScreenImage
```
java.awt.Image offScreenImage
```
offScreenWidth
```
int offScreenWidth
```
overOverlayLabel
```
boolean overOverlayLabel
```
painted
```
boolean painted
```

paintPending

java.util.concurrent.atomic.AtomicBoolean paintPending

pressTimer
```
java.util.Timer pressTimer
```
resetMaxBoundsCount
```
int resetMaxBoundsCount
```
roiPopupMenu
```
java.awt.PopupMenu roiPopupMenu
```
scaleToFit
```
boolean scaleToFit
```
showAllOverlay
```
Overlay showAllOverlay
```
showCursorStatus
```
boolean showCursorStatus
```
srcRect
```
java.awt.Rectangle srcRect
```
sx2
```
int sx2
```
sy2
```
int sy2
```
xMouse
```
int xMouse
```
xMouseStart
```
int xMouseStart
```
xSrcStart
```
int xSrcStart
```
yMouse
```
int yMouse
```
yMouseStart
```
int yMouseStart
```
ySrcStart
```
int ySrcStart
```
zoomTargetOX
```
int zoomTargetOX
```
Image (=offscreen) coordinates where the cursor was moved to for zooming
zoomTargetOY
```
int zoomTargetOY
```

Class ij.gui.ImagePanel extends java.awt.Panel implements Serializable
- Serialized Fields
  - img
```
ImagePlus img
```

Class ij.gui.ImageRoi extends Roi implements Serializable

Serialized Fields

angle
```
double angle
```
composite
```
java.awt.Composite composite
```
img
```
java.awt.Image img
```
ip
```
ImageProcessor ip
```
opacity
```
double opacity
```
zeroTransparent
```
boolean zeroTransparent
```

Class ij.gui.ImageWindow extends java.awt.Frame implements Serializable
- Serialized Fields
  - closed
```
boolean closed
```
  - ic
```
ImageCanvas ic
```
  - ij
```
ImageJ ij
```
  - imp
```
ImagePlus imp
```
  - initialLoc
```
java.awt.Point initialLoc
```
  - initialMagnification
```
double initialMagnification
```
  - maxBounds
```
java.awt.Rectangle maxBounds
```
  - maxWindowBounds
```
java.awt.Rectangle maxWindowBounds
```
  - newCanvas
```
boolean newCanvas
```
  - newHeight
```
int newHeight
```
  - newWidth
```
int newWidth
```
  - running
```
boolean running
```
    This variable is set false if the user presses the escape key or closes the window.
  - running2
```
boolean running2
```
    This variable is set false if the user clicks in this window, presses the escape key, or closes the window.
  - SCALE
```
double SCALE
```
  - screenHeight
```
int screenHeight
```
  - screenWidth
```
int screenWidth
```
  - setMaxBoundsTime
```
long setMaxBoundsTime
```
  - sliderHeight
```
int sliderHeight
```
  - TEXT_GAP
```
int TEXT_GAP
```
  - textGap
```
int textGap
```
  - unzoomWhenMinimizing
```
boolean unzoomWhenMinimizing
```

Class ij.gui.Line extends Roi implements Serializable

Serialized Fields

dragged
```
boolean dragged
```
mouseUpCount
```
int mouseUpCount
```
startxd
```
double startxd
```
startyd
```
double startyd
```
x1
```
int x1
```
x1d
```
double x1d
```
x1R
```
double x1R
```
x2
```
int x2
```
x2d
```
double x2d
```
x2R
```
double x2R
```
y1
```
int y1
```
y1d
```
double y1d
```
y1R
```
double y1R
```
y2
```
int y2
```
y2d
```
double y2d
```
y2R
```
double y2R
```

Class ij.gui.MessageDialog extends java.awt.Dialog implements Serializable
- Serialized Fields
  - button
```
java.awt.Button button
```
  - escapePressed
```
boolean escapePressed
```
  - label
```
MultiLineLabel label
```
Class ij.gui.MultiLineLabel extends java.awt.Canvas implements Serializable
- Serialized Fields
  - line_ascent
```
int line_ascent
```
  - line_height
```
int line_height
```
  - line_widths
```
int[] line_widths
```
  - lines
```
java.lang.String[] lines
```
  - margin_height
```
int margin_height
```
  - margin_width
```
int margin_width
```
  - max_width
```
int max_width
```
  - min_width
```
int min_width
```
  - num_lines
```
int num_lines
```
Class ij.gui.NonBlockingGenericDialog extends GenericDialog implements Serializable
- Serialized Fields
  - imp
```
ImagePlus imp
```
  - windowListener
```
java.awt.event.WindowListener windowListener
```
Class ij.gui.OvalRoi extends Roi implements Serializable
Class ij.gui.PlotCanvas extends ImageCanvas implements Serializable
- Serialized Fields
  - oldHeight
```
int oldHeight
```
  - oldWidth
```
int oldWidth
```
  - plot
```
Plot plot
```
    The plot displayed
  - rangeArrowIndexWhenPressed
```
int rangeArrowIndexWhenPressed
```
  - xScrolled
```
int xScrolled
```
  - yScrolled
```
int yScrolled
```

Class ij.gui.PlotWindow extends ImageWindow implements Serializable

Serialized Fields

activeRangeArrow
```
int activeRangeArrow
```
bgThread
```
java.lang.Thread bgThread
```
data
```
java.awt.Button data
```
dataPopupMenu
```
java.awt.PopupMenu dataPopupMenu
```
defaultDigits
```
int defaultDigits
```
doUpdate
```
boolean doUpdate
```
list
```
java.awt.Button list
```
live
```
java.awt.Button live
```
markSize
```
int markSize
```
menuItems
```
java.awt.MenuItem[] menuItems
```
more
```
java.awt.Button more
```
morePopupMenu
```
java.awt.PopupMenu morePopupMenu
```
plot
```
Plot plot
```
plotMaker
```
PlotMaker plotMaker
```
rangeArrowRois
```
Roi[] rangeArrowRois
```
rangeArrowsVisible
```
boolean rangeArrowsVisible
```
srcImp
```
ImagePlus srcImp
```
statusLabel
```
java.awt.Label statusLabel
```
userStatusText
```
java.lang.String userStatusText
```
wasActivated
```
boolean wasActivated
```

Class ij.gui.PointRoi extends PolygonRoi implements Serializable

Serialized Fields

addToOverlay
```
boolean addToOverlay
```
counter
```
int counter
```
counterInfo
```
int[] counterInfo
```
counters
```
short[] counters
```
counts
```
int[] counts
```
lastPointTime
```
long lastPointTime
```
nCounters
```
int nCounters
```
nMarkers
```
int nMarkers
```
positions
```
int[] positions
```
promptBeforeDeleting
```
boolean promptBeforeDeleting
```
promptBeforeDeletingCalled
```
boolean promptBeforeDeletingCalled
```
rt
```
ResultsTable rt
```
showLabels
```
boolean showLabels
```
size
```
int size
```
type
```
int type
```

Class ij.gui.PolygonRoi extends Roi implements Serializable

Serialized Fields

angle1
```
double angle1
```
boxSize
```
int boxSize
```
clip
```
java.awt.Rectangle clip
```
degrees
```
double degrees
```
maxPoints
```
int maxPoints
```
mouseUpTime
```
long mouseUpTime
```
nPoints
```
int nPoints
```
splinePoints
```
int splinePoints
```
userCreated
```
boolean userCreated
```
xClipMax
```
int xClipMax
```
xClipMin
```
int xClipMin
```
xp
```
int[] xp
```
xp2
```
int[] xp2
```
xpf
```
float[] xpf
```
xSpline
```
float[] xSpline
```
yClipMax
```
int yClipMax
```
yClipMin
```
int yClipMin
```
yp
```
int[] yp
```
yp2
```
int[] yp2
```
ypf
```
float[] ypf
```
ySpline
```
float[] ySpline
```

Class ij.gui.ProgressBar extends java.awt.Canvas implements Serializable

Serialized Fields

backgroundColor
```
java.awt.Color backgroundColor
```
barColor
```
java.awt.Color barColor
```
batchMode
```
boolean batchMode
```
canvasHeight
```
int canvasHeight
```
canvasWidth
```
int canvasWidth
```
dualDisplay
```
boolean dualDisplay
```
fastX
```
double fastX
```
fillColor
```
java.awt.Color fillColor
```
frameBrighter
```
java.awt.Color frameBrighter
```
frameDarker
```
java.awt.Color frameDarker
```
height
```
int height
```
lastTime
```
long lastTime
```
showBar
```
boolean showBar
```
slowX
```
double slowX
```
width
```
int width
```
x
```
int x
```
y
```
int y
```

Class ij.gui.Roi extends java.lang.Object implements Serializable

Serialized Fields

activeHandle
```
int activeHandle
```
activeOverlayRoi
```
boolean activeOverlayRoi
```
antiAlias
```
boolean antiAlias
```
asp_bk
```
double asp_bk
```
aspect
```
boolean aspect
```
bounds
```
java.awt.geom.Rectangle2D.Double bounds
```
cachedMask
```
ImageProcessor cachedMask
```
center
```
boolean center
```
channel
```
int channel
```
clipboard
```
ImagePlus clipboard
```
clipHeight
```
int clipHeight
```
clipWidth
```
int clipWidth
```
clipX
```
int clipX
```
clipY
```
int clipY
```
constrain
```
boolean constrain
```
cornerDiameter
```
int cornerDiameter
```
fillColor
```
java.awt.Color fillColor
```
flattenScale
```
double flattenScale
```
frame
```
int frame
```
group
```
int group
```
handleColor
```
java.awt.Color handleColor
```
handleSize
```
int handleSize
```
height
```
int height
```
hyperstackPosition
```
boolean hyperstackPosition
```
ic
```
ImageCanvas ic
```
ignoreClipRect
```
boolean ignoreClipRect
```
imageID
```
int imageID
```
imp
```
ImagePlus imp
```
instanceColor
```
java.awt.Color instanceColor
```
isCursor
```
boolean isCursor
```
listenersNotified
```
boolean listenersNotified
```
mag
```
double mag
```
modState
```
int modState
```
name
```
java.lang.String name
```
nonScalable
```
boolean nonScalable
```
oldHeight
```
int oldHeight
```
oldWidth
```
int oldWidth
```
oldX
```
int oldX
```
oldY
```
int oldY
```
overlay
```
boolean overlay
```
position
```
int position
```
previousSX
```
int previousSX
```
previousSY
```
int previousSY
```
props
```
java.util.Properties props
```
prototypeOverlay
```
Overlay prototypeOverlay
```
scaleStrokeWidth
```
boolean scaleStrokeWidth
```
slice
```
int slice
```
startX
```
int startX
```
startXD
```
double startXD
```
startY
```
int startY
```
startYD
```
double startYD
```
state
```
int state
```
stroke
```
java.awt.BasicStroke stroke
```
strokeColor
```
java.awt.Color strokeColor
```
subPixel
```
boolean subPixel
```
type
```
int type
```
updateFullWindow
```
boolean updateFullWindow
```
usingDefaultStroke
```
boolean usingDefaultStroke
```
wideLine
```
boolean wideLine
```
width
```
int width
```
x
```
int x
```
xcenter
```
double xcenter
```
xMax
```
int xMax
```
y
```
int y
```
ycenter
```
double ycenter
```
yMax
```
int yMax
```

Class ij.gui.RotatedRectRoi extends PolygonRoi implements Serializable
- Serialized Fields
  - rectWidth
```
double rectWidth
```
  - xstart
```
double xstart
```
  - ystart
```
double ystart
```
Class ij.gui.SaveChangesDialog extends java.awt.Dialog implements Serializable
- Serialized Fields
  - cancel
```
java.awt.Button cancel
```
  - cancelPressed
```
boolean cancelPressed
```
  - dontSave
```
java.awt.Button dontSave
```
  - save
```
java.awt.Button save
```
  - savePressed
```
boolean savePressed
```
Class ij.gui.ScrollbarWithLabel extends java.awt.Panel implements Serializable
- Serialized Fields
  - bar
```
java.awt.Scrollbar bar
```
  - icon
```
ij.gui.ScrollbarWithLabel.Icon icon
```
  - stackWindow
```
StackWindow stackWindow
```
Class ij.gui.ShapeRoi extends Roi implements Serializable
- Serialized Fields
  - flatness
```
double flatness
```
    The instance value of the coefficient (FLATNESS) used to obtain a flattened version of this ROI's shape.
  - flatten
```
boolean flatten
```
    If true then methods that manipulate this ROI's shape will work on a flattened version of the shape.
  - forceAngle
```
boolean forceAngle
```
    Flag which specifies if Roi objects constructed from open (sub)paths composed of only two line segments will be of type Roi.ANGLE. If true then (sub)path will be parsed into a Roi.ANGLE; else, into a Roi.POLYLINE.
  - forceTrace
```
boolean forceTrace
```
    Flag which specifies how Roi objects will be constructed from closed (sub)paths having more than MAXPOLY and composed exclusively of line segments. If true then (sub)path will be parsed into a Roi.TRACED_ROI; else, into a Roi.FREEROI.
  - maxerror
```
double maxerror
```
    The instance value of the maximum tolerance (MAXERROR) allowed in calculating the length of the curve segments of this ROI's shape.
  - maxPoly
```
int maxPoly
```
    The instance value of MAXPOLY.
  - savedRois
```
java.util.Vector savedRois
```
  - shape
```
java.awt.Shape shape
```
    The java.awt.Shape encapsulated by this object.

Class ij.gui.StackWindow extends ImageWindow implements Serializable

Serialized Fields

animationSelector
```
ScrollbarWithLabel animationSelector
```
c
```
int c
```
cSelector
```
ScrollbarWithLabel cSelector
```
done
```
boolean done
```
hyperStack
```
boolean hyperStack
```
nChannels
```
int nChannels
```
nFrames
```
int nFrames
```
nSlices
```
int nSlices
```
slice
```
int slice
```
sliceSelector
```
java.awt.Scrollbar sliceSelector
```
t
```
int t
```
thread
```
java.lang.Thread thread
```
tSelector
```
ScrollbarWithLabel tSelector
```
z
```
int z
```
zSelector
```
ScrollbarWithLabel zSelector
```

Class ij.gui.TextRoi extends Roi implements Serializable

Serialized Fields

angle
```
double angle
```
firstChar
```
boolean firstChar
```
firstMouseUp
```
boolean firstMouseUp
```
font
```
java.awt.Font font
```
fontGraphics
```
java.awt.Graphics fontGraphics
```
justification
```
int justification
```
previousMag
```
double previousMag
```
previousRoi
```
Roi previousRoi
```
theText
```
java.lang.String[] theText
```

Class ij.gui.Toolbar extends java.awt.Canvas implements Serializable

Serialized Fields

addingSingleTool
```
boolean addingSingleTool
```
arrowItem
```
java.awt.CheckboxMenuItem arrowItem
```
brighter
```
java.awt.Color brighter
```
brushItem
```
java.awt.CheckboxMenuItem brushItem
```
currentSet
```
java.lang.String currentSet
```
darker
```
java.awt.Color darker
```
disableRecording
```
boolean disableRecording
```
doNotSavePrefs
```
boolean doNotSavePrefs
```
down
```
boolean[] down
```
ellipseItem
```
java.awt.CheckboxMenuItem ellipseItem
```
evenDarker
```
java.awt.Color evenDarker
```
freeLineItem
```
java.awt.CheckboxMenuItem freeLineItem
```
g
```
java.awt.Graphics g
```
gray
```
java.awt.Color gray
```
icon
```
java.lang.String icon
```
icons
```
java.lang.String[] icons
```
installingStartupTool
```
boolean installingStartupTool
```
linePopup
```
java.awt.PopupMenu linePopup
```
lineType
```
int lineType
```
macroInstaller
```
MacroInstaller macroInstaller
```
menus
```
java.awt.PopupMenu[] menus
```
mouseDownTime
```
long mouseDownTime
```
mpPrevious
```
int mpPrevious
```

multiPointItem

java.awt.CheckboxMenuItem multiPointItem

names
```
java.lang.String[] names
```
nExtraTools
```
int nExtraTools
```
ovalItem
```
java.awt.CheckboxMenuItem ovalItem
```
ovalPopup
```
java.awt.PopupMenu ovalPopup
```
pc
```
int pc
```
pickerPopup
```
java.awt.PopupMenu pickerPopup
```
pointItem
```
java.awt.CheckboxMenuItem pointItem
```
pointPopup
```
java.awt.PopupMenu pointPopup
```
polyLineItem
```
java.awt.CheckboxMenuItem polyLineItem
```
pressTimer
```
java.util.Timer pressTimer
```
previousTool
```
int previousTool
```
ps
```
java.awt.Dimension ps
```
rectItem
```
java.awt.CheckboxMenuItem rectItem
```
rectPopup
```
java.awt.PopupMenu rectPopup
```

rotatedRectItem

java.awt.CheckboxMenuItem rotatedRectItem

roundRectItem
```
java.awt.CheckboxMenuItem roundRectItem
```
startupTime
```
int startupTime
```

straightLineItem

java.awt.CheckboxMenuItem straightLineItem

switchPopup
```
java.awt.PopupMenu switchPopup
```
toolColor
```
java.awt.Color toolColor
```
tools
```
PlugInTool[] tools
```
triangleColor
```
java.awt.Color triangleColor
```
x
```
int x
```
xOffset
```
int xOffset
```
y
```
int y
```
yOffset
```
int yOffset
```
zoomPopup
```
java.awt.PopupMenu zoomPopup
```

Class ij.gui.TrimmedButton extends java.awt.Button implements Serializable
- Serialized Fields
  - trim
```
int trim
```
Class ij.gui.WaitForUserDialog extends java.awt.Dialog implements Serializable
- Serialized Fields
  - button
```
java.awt.Button button
```
  - cancelButton
```
java.awt.Button cancelButton
```
  - escPressed
```
boolean escPressed
```
  - label
```
MultiLineLabel label
```
Class ij.gui.YesNoCancelDialog extends java.awt.Dialog implements Serializable
- Serialized Fields
  - cancelB
```
java.awt.Button cancelB
```
  - cancelPressed
```
boolean cancelPressed
```
  - firstPaint
```
boolean firstPaint
```
  - noB
```
java.awt.Button noB
```
  - yesB
```
java.awt.Button yesB
```
  - yesPressed
```
boolean yesPressed
```

Package ij.io
- Class ij.io.DragAndDropHandler extends javax.swing.TransferHandler implements Serializable
  - Serialized Fields
    - jFileChooser
      
      javax.swing.JFileChooser jFileChooser

Package ij.plugin.frame

Class ij.plugin.frame.Channels extends PlugInDialog implements Serializable

Serialized Fields

checkbox
```
java.awt.Checkbox[] checkbox
```
choice
```
java.awt.Choice choice
```
helpButton
```
java.awt.Button helpButton
```
id
```
int id
```
moreButton
```
java.awt.Button moreButton
```
pm
```
java.awt.PopupMenu pm
```

Class ij.plugin.frame.ColorPicker extends PlugInDialog implements Serializable
- Serialized Fields
  - cg
```
ij.plugin.frame.ColorGenerator cg
```
  - colorCanvas
```
java.awt.Canvas colorCanvas
```
  - colorField
```
java.awt.TextField colorField
```
  - colorHeight
```
int colorHeight
```
  - colorWidth
```
int colorWidth
```
  - columns
```
int columns
```
  - rows
```
int rows
```

Class ij.plugin.frame.ColorThresholder extends PlugInFrame implements Serializable

Serialized Fields

applyingStack
```
boolean applyingStack
```
bandPassB
```
java.awt.Checkbox bandPassB
```
bandPassH
```
java.awt.Checkbox bandPassH
```
bandPassS
```
java.awt.Checkbox bandPassS
```

bplot

ij.plugin.frame.ColorThresholder.BandPlot bplot

bSource
```
byte[] bSource
```
colorSpace
```
int colorSpace
```
colorSpaceChoice
```
java.awt.Choice colorSpaceChoice
```
colourMode
```
java.awt.CheckboxGroup colourMode
```
darkBackground
```
java.awt.Checkbox darkBackground
```
done
```
boolean done
```
filteredB
```
java.awt.Button filteredB
```
flag
```
boolean flag
```
height
```
int height
```
helpB
```
java.awt.Button helpB
```
hSource
```
byte[] hSource
```
ij
```
ImageJ ij
```
label1
```
java.awt.Label label1
```
label2
```
java.awt.Label label2
```
label3
```
java.awt.Label label3
```
label4
```
java.awt.Label label4
```
label5
```
java.awt.Label label5
```
label6
```
java.awt.Label label6
```
labelb
```
java.awt.Label labelb
```
labelf
```
java.awt.Label labelf
```
labelh
```
java.awt.Label labelh
```
labels
```
java.awt.Label labels
```
macroB
```
java.awt.Button macroB
```
maxBri
```
int maxBri
```
maxHue
```
int maxHue
```
maxSat
```
int maxSat
```
maxSlider
```
java.awt.Scrollbar maxSlider
```
maxSlider2
```
java.awt.Scrollbar maxSlider2
```
maxSlider3
```
java.awt.Scrollbar maxSlider3
```
methodChoice
```
java.awt.Choice methodChoice
```
minBri
```
int minBri
```
minHue
```
int minHue
```
minSat
```
int minSat
```
minSlider
```
java.awt.Scrollbar minSlider
```
minSlider2
```
java.awt.Scrollbar minSlider2
```
minSlider3
```
java.awt.Scrollbar minSlider3
```
modeChoice
```
java.awt.Choice modeChoice
```
newB
```
java.awt.Button newB
```
numPixels
```
int numPixels
```
numSlices
```
int numSlices
```
originalB
```
java.awt.Button originalB
```
panel
```
java.awt.Panel panel
```
panelt
```
java.awt.Panel panelt
```

plot

ij.plugin.frame.ColorThresholder.BandPlot plot

previousImageID
```
int previousImageID
```
previousSlice
```
int previousSlice
```
resetallB
```
java.awt.Button resetallB
```
sampleB
```
java.awt.Button sampleB
```
selectB
```
java.awt.Button selectB
```
sliderRange
```
int sliderRange
```

splot

ij.plugin.frame.ColorThresholder.BandPlot splot

sSource
```
byte[] sSource
```
stack
```
ImageStack stack
```
stackB
```
java.awt.Button stackB
```
thread
```
java.lang.Thread thread
```
width
```
int width
```

Class ij.plugin.frame.Commands extends PlugInFrame implements Serializable
- Serialized Fields
  - button
```
java.awt.Button button
```
  - command
```
java.lang.String command
```
  - list
```
java.awt.List list
```

Class ij.plugin.frame.ContrastAdjuster extends PlugInDialog implements Serializable

Serialized Fields

applyB
```
java.awt.Button applyB
```
autoB
```
java.awt.Button autoB
```
autoThreshold
```
int autoThreshold
```
balance
```
boolean balance
```
blankLabel12
```
java.lang.String blankLabel12
```
blankLabel8
```
java.lang.String blankLabel8
```
brightness
```
int brightness
```
brightnessSlider
```
java.awt.Scrollbar brightnessSlider
```
brightnessValue
```
int brightnessValue
```
c
```
java.awt.GridBagConstraints c
```
channels
```
int channels
```
choice
```
java.awt.Choice choice
```
contrast
```
int contrast
```
contrastSlider
```
java.awt.Scrollbar contrastSlider
```
contrastValue
```
int contrastValue
```
defaultMax
```
double defaultMax
```
defaultMin
```
double defaultMin
```
digits
```
int digits
```
doApplyLut
```
boolean doApplyLut
```
doAutoAdjust
```
boolean doAutoAdjust
```
done
```
boolean done
```
doReset
```
boolean doReset
```
doSet
```
boolean doSet
```
gridbag
```
java.awt.GridBagLayout gridbag
```
ij
```
ImageJ ij
```
levelLabel
```
java.awt.Label levelLabel
```
max
```
double max
```
maxLabel
```
java.awt.Label maxLabel
```
maxSlider
```
java.awt.Scrollbar maxSlider
```
maxSliderValue
```
int maxSliderValue
```
min
```
double min
```
minLabel
```
java.awt.Label minLabel
```
minSlider
```
java.awt.Scrollbar minSlider
```
minSliderValue
```
int minSliderValue
```
monoFont
```
java.awt.Font monoFont
```
panel
```
java.awt.Panel panel
```
plot
```
ij.plugin.frame.ContrastPlot plot
```
previousImageID
```
int previousImageID
```
previousMax
```
double previousMax
```
previousMin
```
double previousMin
```
previousSlice
```
int previousSlice
```
previousType
```
int previousType
```
resetB
```
java.awt.Button resetB
```
RGBImage
```
boolean RGBImage
```
sanFont
```
java.awt.Font sanFont
```
scale
```
double scale
```
setB
```
java.awt.Button setB
```
sliderRange
```
int sliderRange
```
thread
```
java.lang.Thread thread
```
tPanel
```
java.awt.Panel tPanel
```
windowLabel
```
java.awt.Label windowLabel
```
windowLevel
```
boolean windowLevel
```
y
```
int y
```

Class ij.plugin.frame.Editor extends PlugInFrame implements Serializable

Serialized Fields

changes
```
boolean changes
```
checkForCurlyQuotes
```
boolean checkForCurlyQuotes
```
debugEnd
```
int debugEnd
```
debugStart
```
int debugStart
```
dontShowWindow
```
boolean dontShowWindow
```
downloading
```
boolean downloading
```
downloadUrl
```
java.lang.String downloadUrl
```
editMenu
```
java.awt.Menu editMenu
```
evaluator
```
JavaScriptEvaluator evaluator
```
eventCount
```
int eventCount
```
fileMenu
```
java.awt.Menu fileMenu
```
fontSizeIndex
```
int fontSizeIndex
```
functionFinder
```
FunctionFinder functionFinder
```

insertSpacesItem

java.awt.CheckboxMenuItem insertSpacesItem

installButton
```
java.awt.Button installButton
```
installer
```
MacroInstaller installer
```
interactiveMode
```
boolean interactiveMode
```
interpreter
```
Interpreter interpreter
```
inUseCount
```
int inUseCount
```
isMacroWindow
```
boolean isMacroWindow
```
language
```
java.awt.Choice language
```
macroNames
```
java.lang.String[] macroNames
```
macrosMenu
```
java.awt.Menu macrosMenu
```
macroStarts
```
int[] macroStarts
```
mb
```
java.awt.MenuBar mb
```
messageCount
```
int messageCount
```
monospaced
```
java.awt.CheckboxMenuItem monospaced
```
nMacros
```
int nMacros
```
p
```
java.util.Properties p
```
path
```
java.lang.String path
```
performingUndo
```
boolean performingUndo
```
pgm
```
Program pgm
```
previousLine
```
int previousLine
```
rejectMacrosMsg
```
java.lang.String rejectMacrosMsg
```
runButton
```
java.awt.Button runButton
```
runToLine
```
int runToLine
```
shortcutsInUse
```
java.lang.String shortcutsInUse
```
sizes
```
int[] sizes
```
step
```
boolean step
```
ta
```
java.awt.TextArea ta
```
undoBuffer
```
java.util.ArrayList undoBuffer
```

Class ij.plugin.frame.Fitter extends PlugInFrame implements Serializable

Serialized Fields

apply
```
java.awt.Button apply
```
doIt
```
java.awt.Button doIt
```
dx
```
double[] dx
```
dy
```
double[] dy
```
fit
```
java.awt.Choice fit
```
fitTypeStr
```
java.lang.String fitTypeStr
```
open
```
java.awt.Button open
```
settings
```
java.awt.Checkbox settings
```
textArea
```
java.awt.TextArea textArea
```
x
```
double[] x
```
y
```
double[] y
```

Class ij.plugin.frame.LineWidthAdjuster extends PlugInFrame implements Serializable

Serialized Fields

checkbox
```
java.awt.Checkbox checkbox
```
done
```
boolean done
```
lineWidth0
```
int lineWidth0
```
setText
```
boolean setText
```
slider
```
java.awt.Scrollbar slider
```
sliderRange
```
int sliderRange
```
tf
```
java.awt.TextField tf
```
thread
```
java.lang.Thread thread
```
value
```
int value
```

Class ij.plugin.frame.MemoryMonitor extends PlugInFrame implements Serializable
- Serialized Fields
  - defaultMax
```
double defaultMax
```
  - done
```
boolean done
```
  - frames
```
int frames
```
  - g
```
java.awt.Graphics2D g
```
  - image
```
java.awt.Image image
```
  - index
```
int index
```
  - max
```
double max
```
  - maxMemory
```
long maxMemory
```
  - mem
```
double[] mem
```
  - value
```
long value
```
Class ij.plugin.frame.PasteController extends PlugInFrame implements Serializable
- Serialized Fields
  - panel
```
java.awt.Panel panel
```
  - pasteMode
```
java.awt.Choice pasteMode
```
Class ij.plugin.frame.PlugInDialog extends java.awt.Dialog implements Serializable
Class ij.plugin.frame.PlugInFrame extends java.awt.Frame implements Serializable
- Serialized Fields
  - title
```
java.lang.String title
```
Class ij.plugin.frame.Recorder extends PlugInFrame implements Serializable
- Serialized Fields
  - fileName
```
java.awt.TextField fileName
```
  - fitTypeStr
```
java.lang.String fitTypeStr
```
  - help
```
java.awt.Button help
```
  - makeMacro
```
java.awt.Button makeMacro
```
  - mode
```
java.awt.Choice mode
```

Class ij.plugin.frame.RoiManager extends PlugInFrame implements Serializable

Serialized Fields

allowDuplicates
```
boolean allowDuplicates
```
allowRecording
```
boolean allowRecording
```
appendResults
```
boolean appendResults
```
canceled
```
boolean canceled
```
colorButton
```
java.awt.Button colorButton
```
defaultColor
```
java.awt.Color defaultColor
```
defaultLineWidth
```
int defaultLineWidth
```
firstTime
```
boolean firstTime
```
ignoreInterrupts
```
boolean ignoreInterrupts
```
imageID
```
int imageID
```
labelsCheckbox
```
java.awt.Checkbox labelsCheckbox
```
list
```
javax.swing.JList list
```
listModel
```
javax.swing.DefaultListModel listModel
```
macro
```
boolean macro
```
moreButton
```
java.awt.Button moreButton
```
multiCropFormatIndex
```
int multiCropFormatIndex
```
multiCropSave
```
boolean multiCropSave
```
multiCropShow
```
boolean multiCropShow
```
noUpdateMode
```
boolean noUpdateMode
```
overlayTemplate
```
Overlay overlayTemplate
```
panel
```
java.awt.Panel panel
```
pm
```
java.awt.PopupMenu pm
```
prevID
```
int prevID
```
recordShowAll
```
boolean recordShowAll
```
rois
```
java.util.ArrayList rois
```
showAllCheckbox
```
java.awt.Checkbox showAllCheckbox
```
translateX
```
double translateX
```
translateY
```
double translateY
```

Class ij.plugin.frame.SyncWindows extends PlugInFrame implements Serializable
- Serialized Fields
  - bSyncAll
```
java.awt.Button bSyncAll
```
    Buttons for user control.
  - bUnsyncAll
```
java.awt.Button bUnsyncAll
```
    Buttons for user control.
  - cChannel
```
java.awt.Checkbox cChannel
```
    Checkboxes for user control.
  - cCoords
```
java.awt.Checkbox cCoords
```
    Checkboxes for user control.
  - cCursor
```
java.awt.Checkbox cCursor
```
    Checkboxes for user control.
  - cFrame
```
java.awt.Checkbox cFrame
```
    Checkboxes for user control.
  - cScaling
```
java.awt.Checkbox cScaling
```
    Checkboxes for user control.
  - cSlice
```
java.awt.Checkbox cSlice
```
    Checkboxes for user control.
  - currentMag
```
double currentMag
```
  - currentSrcRect
```
java.awt.Rectangle currentSrcRect
```
  - ijInstance
```
ImageJ ijInstance
```
    reference to current instance of ImageJ (to avoid repeated IJ.getInstance() s)
  - oldX
```
int oldX
```
  - oldY
```
int oldY
```
  - panel
```
java.awt.Panel panel
```
    Panel for GUI
  - vListMap
```
java.util.Vector vListMap
```
    Hashtable to map list ids to image window ids.
  - vwins
```
java.util.Vector vwins
```
    Indices of synchronized image windows are maintained in this Vector.
  - wList
```
java.awt.List wList
```
    List of currently displayed windows retrieved from ImageJ window manager.
  - x
```
int x
```
  - y
```
int y
```

Class ij.plugin.frame.ThresholdAdjuster extends PlugInDialog implements Serializable

Serialized Fields

applyB
```
java.awt.Button applyB
```
autoB
```
java.awt.Button autoB
```
darkBackground
```
java.awt.Checkbox darkBackground
```
doApplyLut
```
boolean doApplyLut
```
doAutoAdjust
```
boolean doAutoAdjust
```
doBackground
```
boolean doBackground
```
done
```
boolean done
```
doReset
```
boolean doReset
```
doSet
```
boolean doSet
```
doStateChange
```
boolean doStateChange
```
enterPressed
```
boolean enterPressed
```
firstActivation
```
boolean firstActivation
```
ij
```
ImageJ ij
```
imageWasUpdated
```
boolean imageWasUpdated
```
lutColor
```
int lutColor
```
maxLabel
```
java.awt.TextField maxLabel
```
maxSlider
```
java.awt.Scrollbar maxSlider
```
maxThreshold
```
double maxThreshold
```
maxValue
```
int maxValue
```
methodChoice
```
java.awt.Choice methodChoice
```
minLabel
```
java.awt.TextField minLabel
```
minSlider
```
java.awt.Scrollbar minSlider
```
minThreshold
```
double minThreshold
```
minValue
```
int minValue
```
modeChoice
```
java.awt.Choice modeChoice
```
noReset
```
boolean noReset
```
noResetChanged
```
boolean noResetChanged
```
noResetCheckbox
```
java.awt.Checkbox noResetCheckbox
```
panel
```
java.awt.Panel panel
```
percentiles
```
java.awt.Label percentiles
```
plot
```
ij.plugin.frame.ThresholdPlot plot
```
previousImageID
```
int previousImageID
```
previousImageType
```
int previousImageType
```
previousMax
```
double previousMax
```
previousMin
```
double previousMin
```
previousRoiHashCode
```
int previousRoiHashCode
```
previousSlice
```
int previousSlice
```
rawValues
```
java.awt.Checkbox rawValues
```
resetB
```
java.awt.Button resetB
```
setB
```
java.awt.Button setB
```
setButtonPressed
```
boolean setButtonPressed
```
sliderRange
```
int sliderRange
```
stackHistogram
```
java.awt.Checkbox stackHistogram
```
thread
```
java.lang.Thread thread
```
windowActivated
```
boolean windowActivated
```

Package ij.text

Class ij.text.TextPanel extends java.awt.Panel implements Serializable

Serialized Fields

bDrag
```
boolean bDrag
```
columnsManuallyAdjusted
```
boolean columnsManuallyAdjusted
```
defaultCursor
```
java.awt.Cursor defaultCursor
```
editMenu
```
java.awt.Menu editMenu
```
fileMenu
```
java.awt.Menu fileMenu
```
filePath
```
java.lang.String filePath
```
headings
```
boolean headings
```
iColCount
```
int iColCount
```
iColDrag
```
int iColDrag
```
iColWidth
```
int[] iColWidth
```
iFirstRow
```
int iFirstRow
```
iGridHeight
```
int iGridHeight
```
iGridWidth
```
int iGridWidth
```
iRowCount
```
int iRowCount
```
iRowHeight
```
int iRowHeight
```
iSbHeight
```
int iSbHeight
```
iSbWidth
```
int iSbWidth
```
iX
```
int iX
```
iXDrag
```
int iXDrag
```
iY
```
int iY
```
keyListener
```
java.awt.event.KeyListener keyListener
```
labels
```
java.lang.String labels
```
menusExtended
```
boolean menusExtended
```
mouseDownTime
```
long mouseDownTime
```
pm
```
java.awt.PopupMenu pm
```
resizeCursor
```
java.awt.Cursor resizeCursor
```
rt
```
ResultsTable rt
```
saveAsCSV
```
boolean saveAsCSV
```
sbHoriz
```
java.awt.Scrollbar sbHoriz
```
sbVert
```
java.awt.Scrollbar sbVert
```
sColHead
```
java.lang.String[] sColHead
```
searchString
```
java.lang.String searchString
```
selEnd
```
int selEnd
```
selLine
```
int selLine
```
selOrigin
```
int selOrigin
```
selStart
```
int selStart
```
tc
```
ij.text.TextCanvas tc
```
title
```
java.lang.String title
```
unsavedLines
```
boolean unsavedLines
```
vData
```
java.util.Vector vData
```

Class ij.text.TextWindow extends java.awt.Frame implements Serializable

Serialized Fields

antialiasedButton

java.awt.CheckboxMenuItem antialiasedButton

fontSize
```
int fontSize
```
isResultsTable
```
boolean isResultsTable
```
mb
```
java.awt.MenuBar mb
```

monospacedButton

java.awt.CheckboxMenuItem monospacedButton

sizes
```
int[] sizes
```
textPanel
```
TextPanel textPanel
```

Serialized Form

Package ij

Class ij.ImageJ extends java.awt.Frame implements Serializable

Serialized Fields

actionPerformedTime

applet

classes

embedded

exitWhenQuitting

firstTime

hotkey

keyPressedTime

lastKeyCommand

progressBar

quitMacro

quitting

statusBar

statusLine

toolbar

windowClosed

Class ij.ImageJApplet extends java.applet.Applet implements Serializable

Package ij.gui

Class ij.gui.Arrow extends Line implements Serializable

Serialized Fields

doubleHeaded

headShaftRatio

headSize

outline

path

points

style

Class ij.gui.EllipseRoi extends PolygonRoi implements Serializable

Serialized Fields

aspectRatio

handle

xstart

ystart

Class ij.gui.FreehandRoi extends PolygonRoi implements Serializable

Class ij.gui.GenericDialog extends java.awt.Dialog implements Serializable

Serialized Fields

addToSameRow

addToSameRowCalled

bottomInset

c

cancel

cbIndex

centerDialog

checkbox

choice

choiceIndex

customInsets

defaultChoiceIndexes

defaultStrings

defaultText

defaultValues

dialogListeners

echoChar

errorMessage

firstNumericField

firstPaint

firstSlider

fontSizeSet

help

helpLabel

helpURL

hideCancelButton

imagePanels

invalidNumber

labels

lastLabelAdded

leftInset

macro

macroOptions

nfIndex

no

numberField

okay

optionsRecorded

pfr

previewCheckbox