- java.lang.Object
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- ij.io.RoiDecoder
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public class RoiDecoder extends java.lang.ObjectThis class decodes an ImageJ .roi file.Format of the original 64 byte ImageJ/NIH Image .roi file header. Two byte numbers are big-endian signed shorts. The JavaScript example at http://wsr.imagej.net/macros/js/DecodeRoiFile.js demonstrates how to use this information to decode a .roi file.
0-3 "Iout" 4-5 version (>=217) 6-7 roi type (encoded as one byte) 8-9 top 10-11 left 12-13 bottom 14-15 right 16-17 NCoordinates 18-33 x1,y1,x2,y2 (straight line) | x,y,width,height (double rect) | size (npoints) 34-35 stroke width (v1.43i or later) 36-39 ShapeRoi size (type must be 1 if this value>0) 40-43 stroke color (v1.43i or later) 44-47 fill color (v1.43i or later) 48-49 subtype (v1.43k or later) 50-51 options (v1.43k or later) 52-52 arrow style or aspect ratio (v1.43p or later) 53-53 arrow head size (v1.43p or later) 54-55 rounded rect arc size (v1.43p or later) 56-59 position 60-63 header2 offset 64- x-coordinates (short), followed by y-coordinates- See Also:
- DecodeRoiFile.js
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Field Summary
Fields Modifier and Type Field Description static intARROWstatic intARROW_HEAD_SIZEstatic intARROW_STYLEstatic intBOTTOMstatic intC_POSITIONstatic intCOORDINATESstatic intCOUNTERS_OFFSETstatic intDOUBLE_HEADEDstatic intDRAW_OFFSETstatic intELLIPSEstatic intFILL_COLORstatic intFLOAT_PARAMstatic intFLOAT_STROKE_WIDTHstatic intGROUPstatic intHEADER2_OFFSETstatic intHEIGHTDstatic intIMAGEstatic intIMAGE_OPACITYstatic intIMAGE_SIZEstatic intLEFTstatic intN_COORDINATESstatic intNAME_LENGTHstatic intNAME_OFFSETstatic intOPTIONSstatic intOUTLINEstatic intOVERLAY_BACKGROUNDSstatic intOVERLAY_BOLDstatic intOVERLAY_FONT_SIZEstatic intOVERLAY_LABEL_COLORstatic intOVERLAY_LABELSstatic intOVERLAY_NAMESstatic intPOINT_TYPEstatic intPOSITIONstatic intPROMPT_BEFORE_DELETINGstatic intRIGHTstatic intROI_PROPS_LENGTHstatic intROI_PROPS_OFFSETstatic intROTATED_RECTstatic intROUNDED_RECT_ARC_SIZEstatic intSCALE_LABELSstatic intSCALE_STROKE_WIDTHstatic intSHAPE_ROI_SIZEstatic intSHOW_LABELSstatic intSIZEstatic intSPLINE_FITstatic intSTROKE_COLORstatic intSTROKE_WIDTHstatic intSUB_PIXEL_RESOLUTIONstatic intSUBTYPEstatic intT_POSITIONstatic intTEXTstatic intTOPstatic intTYPEstatic intVERSION_OFFSETstatic intWIDTHDstatic intX1static intX2static intXDstatic intY1static intY2static intYDstatic intZ_POSITIONstatic intZERO_TRANSPARENT
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Constructor Summary
Constructors Constructor Description RoiDecoder(byte[] bytes, java.lang.String name)Constructs an RoiDecoder using a byte array.RoiDecoder(java.lang.String path)Constructs an RoiDecoder using a file path.
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description RoigetRoi()Returns the ROI.RoigetShapeRoi()static Roiopen(java.lang.String path)Opens the Roi at the specified path.static RoiopenFromByteArray(byte[] bytes)Opens an ROI from a byte array.
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Field Detail
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VERSION_OFFSET
public static final int VERSION_OFFSET
- See Also:
- Constant Field Values
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TYPE
public static final int TYPE
- See Also:
- Constant Field Values
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TOP
public static final int TOP
- See Also:
- Constant Field Values
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LEFT
public static final int LEFT
- See Also:
- Constant Field Values
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BOTTOM
public static final int BOTTOM
- See Also:
- Constant Field Values
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RIGHT
public static final int RIGHT
- See Also:
- Constant Field Values
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N_COORDINATES
public static final int N_COORDINATES
- See Also:
- Constant Field Values
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X1
public static final int X1
- See Also:
- Constant Field Values
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Y1
public static final int Y1
- See Also:
- Constant Field Values
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X2
public static final int X2
- See Also:
- Constant Field Values
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Y2
public static final int Y2
- See Also:
- Constant Field Values
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XD
public static final int XD
- See Also:
- Constant Field Values
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YD
public static final int YD
- See Also:
- Constant Field Values
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WIDTHD
public static final int WIDTHD
- See Also:
- Constant Field Values
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HEIGHTD
public static final int HEIGHTD
- See Also:
- Constant Field Values
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SIZE
public static final int SIZE
- See Also:
- Constant Field Values
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STROKE_WIDTH
public static final int STROKE_WIDTH
- See Also:
- Constant Field Values
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SHAPE_ROI_SIZE
public static final int SHAPE_ROI_SIZE
- See Also:
- Constant Field Values
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STROKE_COLOR
public static final int STROKE_COLOR
- See Also:
- Constant Field Values
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FILL_COLOR
public static final int FILL_COLOR
- See Also:
- Constant Field Values
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SUBTYPE
public static final int SUBTYPE
- See Also:
- Constant Field Values
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OPTIONS
public static final int OPTIONS
- See Also:
- Constant Field Values
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ARROW_STYLE
public static final int ARROW_STYLE
- See Also:
- Constant Field Values
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FLOAT_PARAM
public static final int FLOAT_PARAM
- See Also:
- Constant Field Values
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POINT_TYPE
public static final int POINT_TYPE
- See Also:
- Constant Field Values
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ARROW_HEAD_SIZE
public static final int ARROW_HEAD_SIZE
- See Also:
- Constant Field Values
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ROUNDED_RECT_ARC_SIZE
public static final int ROUNDED_RECT_ARC_SIZE
- See Also:
- Constant Field Values
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POSITION
public static final int POSITION
- See Also:
- Constant Field Values
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HEADER2_OFFSET
public static final int HEADER2_OFFSET
- See Also:
- Constant Field Values
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COORDINATES
public static final int COORDINATES
- See Also:
- Constant Field Values
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C_POSITION
public static final int C_POSITION
- See Also:
- Constant Field Values
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Z_POSITION
public static final int Z_POSITION
- See Also:
- Constant Field Values
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T_POSITION
public static final int T_POSITION
- See Also:
- Constant Field Values
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NAME_OFFSET
public static final int NAME_OFFSET
- See Also:
- Constant Field Values
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NAME_LENGTH
public static final int NAME_LENGTH
- See Also:
- Constant Field Values
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OVERLAY_LABEL_COLOR
public static final int OVERLAY_LABEL_COLOR
- See Also:
- Constant Field Values
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OVERLAY_FONT_SIZE
public static final int OVERLAY_FONT_SIZE
- See Also:
- Constant Field Values
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GROUP
public static final int GROUP
- See Also:
- Constant Field Values
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IMAGE_OPACITY
public static final int IMAGE_OPACITY
- See Also:
- Constant Field Values
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IMAGE_SIZE
public static final int IMAGE_SIZE
- See Also:
- Constant Field Values
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FLOAT_STROKE_WIDTH
public static final int FLOAT_STROKE_WIDTH
- See Also:
- Constant Field Values
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ROI_PROPS_OFFSET
public static final int ROI_PROPS_OFFSET
- See Also:
- Constant Field Values
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ROI_PROPS_LENGTH
public static final int ROI_PROPS_LENGTH
- See Also:
- Constant Field Values
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COUNTERS_OFFSET
public static final int COUNTERS_OFFSET
- See Also:
- Constant Field Values
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TEXT
public static final int TEXT
- See Also:
- Constant Field Values
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ARROW
public static final int ARROW
- See Also:
- Constant Field Values
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ELLIPSE
public static final int ELLIPSE
- See Also:
- Constant Field Values
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IMAGE
public static final int IMAGE
- See Also:
- Constant Field Values
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ROTATED_RECT
public static final int ROTATED_RECT
- See Also:
- Constant Field Values
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SPLINE_FIT
public static final int SPLINE_FIT
- See Also:
- Constant Field Values
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DOUBLE_HEADED
public static final int DOUBLE_HEADED
- See Also:
- Constant Field Values
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OUTLINE
public static final int OUTLINE
- See Also:
- Constant Field Values
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OVERLAY_LABELS
public static final int OVERLAY_LABELS
- See Also:
- Constant Field Values
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OVERLAY_NAMES
public static final int OVERLAY_NAMES
- See Also:
- Constant Field Values
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OVERLAY_BACKGROUNDS
public static final int OVERLAY_BACKGROUNDS
- See Also:
- Constant Field Values
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OVERLAY_BOLD
public static final int OVERLAY_BOLD
- See Also:
- Constant Field Values
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SUB_PIXEL_RESOLUTION
public static final int SUB_PIXEL_RESOLUTION
- See Also:
- Constant Field Values
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DRAW_OFFSET
public static final int DRAW_OFFSET
- See Also:
- Constant Field Values
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ZERO_TRANSPARENT
public static final int ZERO_TRANSPARENT
- See Also:
- Constant Field Values
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SHOW_LABELS
public static final int SHOW_LABELS
- See Also:
- Constant Field Values
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SCALE_LABELS
public static final int SCALE_LABELS
- See Also:
- Constant Field Values
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PROMPT_BEFORE_DELETING
public static final int PROMPT_BEFORE_DELETING
- See Also:
- Constant Field Values
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SCALE_STROKE_WIDTH
public static final int SCALE_STROKE_WIDTH
- See Also:
- Constant Field Values
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Method Detail
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open
public static Roi open(java.lang.String path)
Opens the Roi at the specified path. Returns null if there is an error.
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getRoi
public Roi getRoi() throws java.io.IOException
Returns the ROI.- Throws:
java.io.IOException
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getShapeRoi
public Roi getShapeRoi() throws java.io.IOException
- Throws:
java.io.IOException
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openFromByteArray
public static Roi openFromByteArray(byte[] bytes)
Opens an ROI from a byte array.
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