Uses of Class
ij.ImagePlus

Packages that use ImagePlus

Package	Description
ij
ij.gui
ij.io
ij.macro
ij.measure
ij.plugin
ij.plugin.filter
ij.plugin.frame
ij.plugin.tool
ij.process
ij.util

Uses of ImagePlus in ij

Subclasses of ImagePlus in ij

Modifier and Type	Class	Description
class	CompositeImage

Methods in ij that return ImagePlus

Modifier and Type	Method	Description
static ImagePlus	IJ.createHyperStack(java.lang.String title, int width, int height, int channels, int slices, int frames, int bitdepth)	Creates a new hyperstack.
ImagePlus	ImagePlus.createHyperStack(java.lang.String title, int channels, int slices, int frames, int bitDepth)	This method has been replaced by IJ.createHyperStack().
static ImagePlus	IJ.createImage(java.lang.String title, int width, int height, int depth, int bitdepth)	Creates a new image.
static ImagePlus	IJ.createImage(java.lang.String title, java.lang.String type, int width, int height, int depth)	Creates a new imagePlus.
static ImagePlus	IJ.createImage(java.lang.String title, java.lang.String type, int width, int height, int channels, int slices, int frames)	Creates a new hyperstack.
ImagePlus	ImagePlus.createImagePlus()	Returns a new ImagePlus with this image's attributes (e.g.
ImagePlus	ImagePlus.crop()	Returns a copy this image or stack slice, cropped if there is an ROI.
ImagePlus[]	ImagePlus.crop(Roi[] rois)	Multi-roi cropping with default "slice" option.
ImagePlus[]	ImagePlus.crop(Roi[] rois, java.lang.String options)	Returns an array of cropped images based on the provided list of rois.
ImagePlus	ImagePlus.crop(java.lang.String options)	Returns a cropped copy this image or stack, where 'options' can be "stack", "slice", "whole-slice" or a range (e.g., "20-30").
ImagePlus	ImagePlus.duplicate()	Returns a copy of this image or stack.
ImagePlus	ImagePlus.flatten()	Returns a "flattened" version of this image, or stack slice, in RGB format.
static ImagePlus	ImagePlus.getClipboard()	Returns the internal clipboard or null if the internal clipboard is empty.
static ImagePlus	WindowManager.getCurrentImage()	Returns a reference to the active image or null if there isn't one.
static ImagePlus	IJ.getImage()	Returns a reference to the active image, or displays an error message and aborts the plugin or macro if no images are open.
static ImagePlus	IJ.getImage(Interpreter interpreter)	The macro interpreter uses this method to call getImage().
static ImagePlus	WindowManager.getImage(int imageID)	For IDs less than zero, returns the ImagePlus with the specified ID.
static ImagePlus	WindowManager.getImage(java.lang.String title)	Returns the first image that has the specified title or null if it is not found.
static ImagePlus	WindowManager.getTempCurrentImage()	Returns the temporary current image for this thread, or null.
static ImagePlus	IJ.openImage()	Opens an image using a file open dialog and returns it as an ImagePlus object.
static ImagePlus	IJ.openImage(java.lang.String path)	Opens the specified file as a tiff, bmp, dicom, fits, pgm, gif, jpeg or text image and returns an ImagePlus object if successful.
static ImagePlus	IJ.openImage(java.lang.String path, int n)	Opens the nth image of the specified tiff stack.
static ImagePlus	IJ.openVirtual(java.lang.String path)	Opens the specified tiff file as a virtual stack.
ImagePlus	ImagePlus.resize(int dstWidth, int dstHeight, int dstDepth, java.lang.String options)	Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.
ImagePlus	ImagePlus.resize(int dstWidth, int dstHeight, java.lang.String options)	Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.

Methods in ij with parameters of type ImagePlus

Modifier and Type	Method	Description
void	ImagePlus.copyAttributes(ImagePlus imp)	Used internally.
void	CompositeImage.copyLuts(ImagePlus imp)	Copies the LUTs and display mode of 'imp' to this image.
void	ImagePlus.copyScale(ImagePlus imp)	Copies the calibration of the specified image to this image.
static ImageStack	ImageStack.create(ImagePlus[] images)	Creates an ImageStack from an ImagePlus array.
static void	IJ.doCommand(ImagePlus imp, java.lang.String command)	Runs a menu command on a separete thread, using the specified image.
static int	IJ.doWand(ImagePlus img, int x, int y, double tolerance, java.lang.String mode)	This version of doWand adds an ImagePlus argument.
static java.lang.String	WindowManager.getUniqueName(ImagePlus imp, java.lang.String name)
static double	IJ.getValue(ImagePlus imp, java.lang.String measurement)	Returns a measurement result, where 'measurement' is "Area", "Mean", "StdDev", "Mode", "Min", "Max", "X", "Y", "XM", "YM", "Perim.", "BX", "BY", "Width", "Height", "Major", "Minor", "Angle", "Circ.", "Feret", "IntDen", "Median", "Skew", "Kurt", "%Area", "RawIntDen", "Ch", "Slice", "Frame", "FeretX", "FeretY", "FeretAngle", "MinFeret", "AR", "Round", "Solidity", "MinThr" or "MaxThr".
void	ImageListener.imageClosed(ImagePlus imp)
void	ImageListener.imageOpened(ImagePlus imp)
void	ImageListener.imageUpdated(ImagePlus imp)
static void	IJ.resetMinAndMax(ImagePlus img)	Resets the minimum and maximum displayed pixel values of the specified image to be the same as the min and max pixel values.
static void	IJ.resetThreshold(ImagePlus img)	Disables thresholding on the specified image.
static void	IJ.run(ImagePlus imp, java.lang.String command, java.lang.String options)	Runs an ImageJ command using the specified image and options.
static java.lang.Object	IJ.runPlugIn(ImagePlus imp, java.lang.String className, java.lang.String arg)	Runs the specified plugin using the specified image.
static void	IJ.save(ImagePlus imp, java.lang.String path)	Saves the specified image, lookup table or selection to the specified file path.
static void	IJ.saveAs(ImagePlus imp, java.lang.String format, java.lang.String path)
static boolean	IJ.saveAsTiff(ImagePlus imp, java.lang.String path)	Saves the specified image in TIFF format.
static void	Undo.saveOverlay(ImagePlus imp)
static void	IJ.setAutoThreshold(ImagePlus imp, java.lang.String method)
void	ImagePlus.setImage(ImagePlus imp)	Replaces this image with the specified ImagePlus.
static void	IJ.setMinAndMax(ImagePlus img, double min, double max)	Sets the display range (minimum and maximum displayed pixel values) of the specified image.
static void	IJ.setRawThreshold(ImagePlus img, double lowerThreshold, double upperThreshold)	This is a version of setThreshold() that uses raw (uncalibrated) values in the range 0-255 for 8-bit images and 0-65535 for 16-bit images and the "Red" LUT display mode.
static void	IJ.setRawThreshold(ImagePlus img, double lowerThreshold, double upperThreshold, java.lang.String displayMode)	This is a version of setThreshold() that always uses raw (uncalibrated) values in the range 0-255 for 8-bit images and 0-65535 for 16-bit images.
static void	WindowManager.setTempCurrentImage(ImagePlus img)	Makes the specified image temporarily the active image for this thread.
static void	WindowManager.setTempCurrentImage(java.lang.Thread thread, ImagePlus img)	Sets a temporary image for the specified thread.
static void	IJ.setThreshold(ImagePlus img, double lowerThreshold, double upperThreshold)	Sets the lower and upper threshold levels of the specified image.
static void	IJ.setThreshold(ImagePlus img, double lowerThreshold, double upperThreshold, java.lang.String displayMode)	Sets the lower and upper threshold levels of the specified image and updates the display using the specified displayMode ("Red", "Black & White", "Over/Under" or "No Update").
static void	Undo.setup(int what, ImagePlus imp)
static int	IJ.setupDialog(ImagePlus imp, int flags)	Displays a "Process all images?" dialog.
static void	IJ.showTime(ImagePlus imp, long start, java.lang.String str)
static void	IJ.showTime(ImagePlus imp, long start, java.lang.String str, int nslices)
static java.lang.String	IJ.time(ImagePlus imp, long startNanoTime)	Experimental
static void	Menus.updateWindowMenuItem(ImagePlus imp, java.lang.String oldLabel, java.lang.String newLabel)	Changes the name of an item in the Window menu.

Constructors in ij with parameters of type ImagePlus

Constructor	Description
CompositeImage(ImagePlus imp)
CompositeImage(ImagePlus imp, int mode)
Executer(java.lang.String cmd, ImagePlus imp)	Create an Executer that runs the specified menu command in a separate thread using the specified image, or using the active image if 'imp' is null.

Uses of ImagePlus in ij.gui

Subclasses of ImagePlus in ij.gui

Modifier and Type	Class	Description
class	HistogramPlot

Fields in ij.gui declared as ImagePlus

Modifier and Type	Field	Description
protected ImagePlus	Roi.clipboard
protected ImagePlus	ImageCanvas.imp
protected ImagePlus	ImageWindow.imp
protected ImagePlus	ProfilePlot.imp
protected ImagePlus	Roi.imp

Methods in ij.gui that return ImagePlus

Modifier and Type	Method	Description
static ImagePlus	NewImage.createByteImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createFloatImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createImage(java.lang.String title, int width, int height, int nSlices, int bitDepth, int options)
static ImagePlus	NewImage.createIntImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createRGBImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createShortImage(java.lang.String title, int width, int height, int slices, int options)	Creates an unsigned short image.
static ImagePlus	NewImage.createUnsignedShortImage(java.lang.String title, int width, int height, int slices, int options)	Deprecated. Short images are always unsigned.
ImagePlus	ImageCanvas.getImage()	Returns the ImagePlus object that is associated with this ImageCanvas.
ImagePlus	Roi.getImage()	Returns the ImagePlus associated with this ROI, or null.
ImagePlus	ImageWindow.getImagePlus()
ImagePlus	Plot.getImagePlus()	Returns the plot as an ImagePlus.
ImagePlus	GenericDialog.getNextImage()
ImagePlus	PlotMaker.getSourceImage()	Returns the ImagePlus used to generate the profile plots.
ImagePlus	Plot.makeHighResolution(java.lang.String title, float scale, boolean antialiasedText, boolean showIt)	Creates a new high-resolution plot by scaling it and displays that plot if showIt is true.

Methods in ij.gui with parameters of type ImagePlus

Modifier and Type	Method	Description
void	Roi.abortModification(ImagePlus imp)	Aborts constructing or modifying the roi (called by the ImageJ class on escape)
void	GenericDialog.addImage(ImagePlus image)	Adds an image to the dialog.
void	PointRoi.addPoint(ImagePlus imp, double ox, double oy)	Adds a point to this PointRoi.
void	PointRoi.addUserPoint(ImagePlus imp, double ox, double oy)
void	HistogramPlot.draw(ImagePlus imp, int bins, double histMin, double histMax, int yMax)	Plots a histogram using the specified title, number of bins and histogram range.
void	HistogramPlot.draw(ImagePlus imp, ImageStatistics stats)	Draws the histogram using the specified title and ImageStatistics.
void	HistogramPlot.draw(java.lang.String title, ImagePlus imp, int bins)	Plots a histogram using the specified title and number of bins.
void	Overlay.fill(ImagePlus imp, java.awt.Color foreground, java.awt.Color background)	Fills all the ROIs in this overlay with 'foreground' after clearing the the image to 'background' if it is not null.
static java.lang.String	ImageWindow.getImageSize(ImagePlus imp)
Roi	Roi.getInverse(ImagePlus imp)	Returns the inverted roi, or null if this is not an area roi or cannot be converted to a ShapeRoi.
java.lang.String	TextRoi.getMacroCode(java.lang.String cmd, ImagePlus imp)	Used by the Recorder for recording the text tool.
void	HistogramWindow.imageClosed(ImagePlus imp)
void	PlotWindow.imageClosed(ImagePlus imp)	For live plots, if either the source image or this image are closed, exit live mode
void	HistogramWindow.imageOpened(ImagePlus imp)
void	PlotWindow.imageOpened(ImagePlus imp)
void	HistogramWindow.imageUpdated(ImagePlus imp)
void	PlotWindow.imageUpdated(ImagePlus imp)	For live plots, this method is called if the source image content is changed.
ResultsTable	Overlay.measure(ImagePlus imp)	Measures the ROIs in this overlay on the specified image and returns the results as a ResultsTable.
static GenericDialog	NonBlockingGenericDialog.newDialog(java.lang.String title, ImagePlus imp)	Obsolete, replaced by GUI.newNonBlockingDialog(String,ImagePlus).
static GenericDialog	GUI.newNonBlockingDialog(java.lang.String title, ImagePlus imp)	Returns a new NonBlockingGenericDialog with the given title if Prefs.nonBlockingFilterDialogs is 'true' and 'imp' is displayed, otherwise returns a GenericDialog.
void	HistogramWindow.roiModified(ImagePlus img, int id)
void	PlotWindow.roiModified(ImagePlus img, int id)	For live plots, update the plot if the ROI of the source image changes
void	RoiListener.roiModified(ImagePlus imp, int id)
void	ImageWindow.setImage(ImagePlus imp2)
void	Roi.setImage(ImagePlus imp)	Sets the ImagePlus associated with this ROI.
void	Plot.setImagePlus(ImagePlus imp)	Sets the ImagePlus where the plot will be displayed.
void	Roi.setPosition(ImagePlus imp)	Sets the position of this ROI based on the stack position of the specified image.
static boolean	GUI.showCompositeAdvisory(ImagePlus imp, java.lang.String title)
void	HistogramWindow.showHistogram(ImagePlus imp, int bins)	Draws the histogram using the specified title and number of bins.
void	HistogramWindow.showHistogram(ImagePlus imp, int bins, double histMin, double histMax)	Draws the histogram using the specified title, number of bins and histogram range.
void	HistogramWindow.showHistogram(ImagePlus srcImp, ImageStatistics stats)	Draws the histogram using the specified title and ImageStatistics.
void	Roi.startPaste(ImagePlus clipboard)
void	ImageWindow.updateImage(ImagePlus imp)
static void	Overlay.updateTableOverlay(ImagePlus imp, int first, int last, int tableSize)	Updates overlays created by the particle analyzer after rows are deleted from the Results table.

Constructors in ij.gui with parameters of type ImagePlus

Constructor	Description
Arrow(int sx, int sy, ImagePlus imp)
EllipseRoi(int sx, int sy, ImagePlus imp)
FreehandRoi(int sx, int sy, ImagePlus imp)
HistogramWindow(HistogramPlot plot, ImagePlus srcImp)
HistogramWindow(ImagePlus imp)	Displays a histogram using the title "Histogram of ImageName".
HistogramWindow(java.lang.String title, ImagePlus imp, int bins)	Displays a histogram using the specified title and number of bins.
HistogramWindow(java.lang.String title, ImagePlus imp, int bins, double histMin, double histMax)	Displays a histogram using the specified title, number of bins and histogram range.
HistogramWindow(java.lang.String title, ImagePlus imp, int bins, double histMin, double histMax, int yMax)	Displays a histogram using the specified title, number of bins, histogram range and yMax.
HistogramWindow(java.lang.String title, ImagePlus imp, ImageStatistics stats)	Displays a histogram using the specified title and ImageStatistics.
ImageCanvas(ImagePlus imp)
ImagePanel(ImagePlus img)
ImageWindow(ImagePlus imp)
ImageWindow(ImagePlus imp, ImageCanvas ic)
Line(int ox1, int oy1, int ox2, int oy2, ImagePlus imp)	Deprecated. replaced by Line(int, int, int, int)
Line(int sx, int sy, ImagePlus imp)	Starts the process of creating a new user-generated straight line selection.
OvalRoi(int x, int y, int width, int height, ImagePlus imp)	Deprecated.
OvalRoi(int x, int y, ImagePlus imp)	Starts the process of creating a user-defined OvalRoi.
Plot(ImagePlus imp, java.io.InputStream is)	Constructs a new plot from an InputStream and closes the stream.
PlotCanvas(ImagePlus imp)	Creates a new PlotCanvas
PlotWindow(ImagePlus imp, Plot plot)	Creates a PlotWindow from a given ImagePlus with a Plot object.
PointRoi(int sx, int sy, ImagePlus imp)	Creates a new PointRoi using the specified screen coordinates.
PolygonRoi(int[] xPoints, int[] yPoints, int nPoints, ImagePlus imp, int type)	Deprecated.
PolygonRoi(int sx, int sy, ImagePlus imp)	Starts the process of creating a new user-generated polygon or polyline ROI.
ProfilePlot(ImagePlus imp)
ProfilePlot(ImagePlus imp, boolean averageHorizontally)
Roi(int x, int y, int width, int height, ImagePlus imp)	Deprecated.
Roi(int sx, int sy, ImagePlus imp)	Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.
Roi(int sx, int sy, ImagePlus imp, int cornerDiameter)	Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.
RotatedRectRoi(int sx, int sy, ImagePlus imp)
StackWindow(ImagePlus imp)
StackWindow(ImagePlus imp, ImageCanvas ic)
TextRoi(int x, int y, ImagePlus imp)

Uses of ImagePlus in ij.io

Methods in ij.io that return ImagePlus

Modifier and Type	Method	Description
ImagePlus	Opener.deserialize(byte[] bytes)	Deserialize a byte array that was serialized using the FileSaver.serialize().
ImagePlus	FileOpener.open(boolean show)	Obsolete, replaced by openImage() and open().
ImagePlus	FileOpener.openImage()	Opens the image and returns it has an ImagePlus object.
ImagePlus	Opener.openImage(java.lang.String path)	Opens, but does not display, the specified image file and returns an ImagePlus object object if successful, or returns null if the file is not in a supported format or is not found.
ImagePlus	Opener.openImage(java.lang.String path, int n)	Open the nth image of the specified tiff stack.
ImagePlus	Opener.openImage(java.lang.String directory, java.lang.String name)	Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.
ImagePlus	Opener.openTempImage(java.lang.String directory, java.lang.String name)
ImagePlus	Opener.openTextImage(java.lang.String dir, java.lang.String name)	Opens the specified text file as a float image.
ImagePlus	Opener.openTiff(java.io.InputStream in, java.lang.String name)	Attempts to open the specified inputStream as a TIFF, returning an ImagePlus object if successful.
ImagePlus	Opener.openTiff(java.lang.String path, int n)	Opens the nth image of the specified TIFF stack.
ImagePlus	Opener.openTiff(java.lang.String directory, java.lang.String name)	Attempts to open the specified file as a tiff.
ImagePlus	Opener.openTiffStack(FileInfo[] info)	Attemps to open a tiff file as a stack.
ImagePlus	Opener.openURL(java.lang.String url)	Attempts to open the specified url as a tiff, zip compressed tiff, dicom, gif or jpeg.
static ImagePlus	Opener.openUsingBioFormats(java.lang.String path)	Opens an image file using the Bio-Formats plugin.
static ImagePlus	Opener.openUsingImageIO(java.lang.String path)
ImagePlus	Opener.openWithHandleExtraFileTypes(java.lang.String path, int[] fileTypes)
ImagePlus	Opener.openZip(java.lang.String path)	Opens a single TIFF or DICOM contained in a ZIP archive, or a ZIPed collection of ".roi" files created by the ROI manager.

Methods in ij.io with parameters of type ImagePlus

Modifier and Type	Method	Description
static void	Opener.convertGrayJpegTo8Bits(ImagePlus imp)	Converts the specified RGB image to 8-bits if the 3 channels are identical.
static java.lang.String	Opener.getLoadRate(double time, ImagePlus imp)
static byte[][]	FileSaver.getOverlay(ImagePlus imp)
static java.lang.String	SaveDialog.getPath(ImagePlus imp, java.lang.String extension)
static boolean	FileSaver.okForFits(ImagePlus imp)
static boolean	FileSaver.okForGif(ImagePlus imp)
static boolean	FileSaver.okForJpeg(ImagePlus imp)	Always returns true.
void	FileOpener.revertToSaved(ImagePlus imp)	Restores the original version of the specified image.
void	FileSaver.saveDisplayRangesAndLuts(ImagePlus imp, FileInfo fi)

Constructors in ij.io with parameters of type ImagePlus

Constructor	Description
FileSaver(ImagePlus imp)	Constructs a FileSaver from an ImagePlus.

Uses of ImagePlus in ij.macro

Methods in ij.macro that return ImagePlus

Modifier and Type	Method	Description
static ImagePlus	Interpreter.getBatchModeImage(int id)
static ImagePlus	Interpreter.getLastBatchModeImage()
ImagePlus	Interpreter.runBatchMacro(java.lang.String macro, ImagePlus imp)	Runs Process/Batch/ macros.

Methods in ij.macro with parameters of type ImagePlus

Modifier and Type	Method	Description
static void	Interpreter.activateImage(ImagePlus imp)
static void	Interpreter.addBatchModeImage(ImagePlus imp)
static void	Interpreter.removeBatchModeImage(ImagePlus imp)
ImagePlus	Interpreter.runBatchMacro(java.lang.String macro, ImagePlus imp)	Runs Process/Batch/ macros.

Uses of ImagePlus in ij.measure

Methods in ij.measure with parameters of type ImagePlus

Modifier and Type	Method	Description
void	Calibration.setImage(ImagePlus imp)	Disables the density calibation if the specified image has a differenent bit depth.
void	ResultsTable.update(int measurements, ImagePlus imp, Roi roi)

Constructors in ij.measure with parameters of type ImagePlus

Constructor	Description
Calibration(ImagePlus imp)	Constructs a new Calibration object using the default values.

Uses of ImagePlus in ij.plugin

Subclasses of ImagePlus in ij.plugin

Modifier and Type	Class	Description
class	BMP_Reader	This plugin reads BMP files.
class	DICOM	This plugin decodes DICOM files.
class	FITS_Reader	Opens and displays FITS images.
class	GIF_Reader	This plugin opens GIFs and Animated GIFs.
class	LutLoader	Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
class	PGM_Reader	This plugin opens PxM format images.

Methods in ij.plugin that return ImagePlus

Modifier and Type	Method	Description
ImagePlus	ScreenGrabber.captureImage()	Captures the active image window and returns it as an ImagePlus.
ImagePlus	ScreenGrabber.captureScreen()	Captures the entire screen and returns it as an ImagePlus.
ImagePlus	Concatenator.concatenate(ImagePlus[] ims, boolean keepIms)	Concatenates two or more images or stacks.
ImagePlus	Concatenator.concatenate(ImagePlus imp1, ImagePlus imp2, boolean keep)	Concatenate two images or stacks.
ImagePlus	Concatenator.concatenateHyperstacks(ImagePlus[] images, java.lang.String newTitle, boolean keep)	Obsolete, replaced by concatenate(images,keep) and Concatenator.run(images).
ImagePlus	RGBStackMerge.createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)	Deprecated; replaced by mergeChannels().
ImagePlus	Duplicator.crop(ImagePlus imp)	Returns a copy the current image or stack slice, cropped if there is a selection.
static ImagePlus	FFT.forward(ImagePlus imp)	Performs a forward FHT transform.
static ImagePlus	GelAnalyzer.getGelImage()
static ImagePlus	Orthogonal_Views.getImage()
ImagePlus	AVI_Reader.getImagePlus()	Returns the ImagePlus opened by run().
ImagePlus	ZProjector.getProjection()	Retrieve results of most recent projection operation.
ImagePlus	Profiler.getSourceImage()
ImagePlus	ZAxisProfiler.getSourceImage()
ImagePlus	Orthogonal_Views.getXZImage()
ImagePlus	Orthogonal_Views.getYZImage()
ImagePlus	GroupedZProjector.groupZProject(ImagePlus imp, int method, int groupSize)
static ImagePlus	FFT.inverse(ImagePlus imp)	Performs an inverse FHT transform.
static ImagePlus	CompositeConverter.makeComposite(ImagePlus imp)
ImagePlus	MontageMaker.makeMontage2(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)	Creates a montage and returns it as an ImagePlus.
static ImagePlus	SubHyperstackMaker.makeSubhyperstack(ImagePlus input, java.lang.String cString, java.lang.String zString, java.lang.String tString)
static ImagePlus	SubHyperstackMaker.makeSubhyperstack(ImagePlus input, java.util.List<java.lang.Integer> cList, java.util.List<java.lang.Integer> zList, java.util.List<java.lang.Integer> tList)
ImagePlus	SubstackMaker.makeSubstack(ImagePlus imp, java.lang.String userInput)
static ImagePlus	RGBStackMerge.mergeChannels(ImagePlus[] images, boolean keepSourceImages)
ImagePlus	RGBStackMerge.mergeHyperstacks(ImagePlus[] images, boolean keep)
static ImagePlus	AVI_Reader.open(java.lang.String path, boolean virtual)	Opens an AVI file as a stack in memory or a virtual stack.
static ImagePlus	AVI_Reader.open(java.lang.String path, java.lang.String options)	Opens an AVI file, where 'options' can contain 'virtual' (open as virtual stack), 'convert' (convert color images to grayscale) or 'flip' (flip vertically).
static ImagePlus	FolderOpener.open(java.lang.String path)	Opens the images in the specified directory as a stack.
static ImagePlus	FolderOpener.open(java.lang.String path, int width, int height, java.lang.String options)	Opens the images in the specified directory as a widthxheight stack.
static ImagePlus	FolderOpener.open(java.lang.String path, java.lang.String options)	Opens the images in the specified directory as a stack.
static ImagePlus	Raw.open(java.lang.String filePath, FileInfo fi)	Opens the image at 'filePath' using the format specified by 'fi'.
static ImagePlus	Raw.openAll(java.lang.String directory, FileInfo fi)	Opens all the images in the specified directory as a stack, using the format specified by 'fi'.
static ImagePlus	Raw.openAllVirtual(java.lang.String directory, FileInfo fi)	Opens all the images in the specified directory as a virtual stack, using the format specified by 'fi'.
ImagePlus	FolderOpener.openFolder(java.lang.String path)	Opens the images in the specified directory as a stack.
static ImagePlus	AVI_Reader.openVirtual(java.lang.String path)	Opens an AVI file as a virtual stack.
static ImagePlus	FileInfoVirtualStack.openVirtual(java.lang.String path)	Opens the specified tiff file as a virtual stack.
static ImagePlus	Scaler.resize(ImagePlus imp, int dstWidth, int dstHeight, int dstDepth, java.lang.String options)	Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.
ImagePlus	Slicer.reslice(ImagePlus imp)
static ImagePlus	ChannelArranger.run(ImagePlus img, int[] newOrder)	Changes the order of the channels in a hyperstack.
ImagePlus	Concatenator.run()	Displays a dialog requiring user to choose images and returns ImagePlus of concatenated images.
static ImagePlus	Concatenator.run(ImagePlus[] images)	Concatenates two or more images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2)	Concatenates two images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3)	Concatenates three images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4)	Concatenates four images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4, ImagePlus img5)	Concatenates five images, stacks or hyperstacks.
ImagePlus	Duplicator.run(ImagePlus imp)	Returns a copy of the image, stack or hyperstack contained in the specified ImagePlus.
ImagePlus	Duplicator.run(ImagePlus imp, int firstSlice, int lastSlice)	Returns a new stack containing a subrange of the specified stack.
ImagePlus	Duplicator.run(ImagePlus imp, int firstC, int lastC, int firstZ, int lastZ, int firstT, int lastT)	Returns a new hyperstack containing a possibly reduced version of the input image.
static ImagePlus	ImageCalculator.run(ImagePlus img1, ImagePlus img2, java.lang.String operation)	Performs arithmetic options on two images and returns the result, where 'operation' ("add","subtract", "multiply","divide", "and", "or", "xor", "min", "max", "average", "difference" or "copy") specifies the operation.
ImagePlus	ImageCalculator.run(java.lang.String operation, ImagePlus img1, ImagePlus img2)
static ImagePlus	ImagesToStack.run(ImagePlus[] images)	Converts the images in 'images' to a stack, using the default settings ("copy center" and "titles as labels").
static ImagePlus	SubstackMaker.run(ImagePlus imp, java.lang.String rangeOrList)	Extracts selected slices from a stack to make a new substack.
static ImagePlus	ZProjector.run(ImagePlus imp, java.lang.String method)	Performs projection on the entire stack using the specified method and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".
static ImagePlus	ZProjector.run(ImagePlus imp, java.lang.String method, int startSlice, int stopSlice)	Performs projection using the specified method and stack range, and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".
ImagePlus	Binner.shrink(ImagePlus imp, int xshrink, int yshrink, int zshrink, int method)
static ImagePlus[]	ChannelSplitter.split(ImagePlus imp)	Splits the specified image into separate channels.
static ImagePlus	HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t)	Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").
static ImagePlus	HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String mode)	Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").
static ImagePlus	HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String order, java.lang.String mode)	Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.
ImagePlus	Resizer.zScale(ImagePlus imp, int newDepth, int interpolationMethod)

Methods in ij.plugin with parameters of type ImagePlus

Modifier and Type	Method	Description
static void	GaussianBlur3D.blur(ImagePlus imp, double sigmaX, double sigmaY, double sigmaZ)
void	ImageCalculator.calculate(java.lang.String operation, ImagePlus img1, ImagePlus img2)	Deprecated. replaced by run(String,ImagePlus,ImagePlus)
ImagePlus	Concatenator.concatenate(ImagePlus[] ims, boolean keepIms)	Concatenates two or more images or stacks.
ImagePlus	Concatenator.concatenate(ImagePlus imp1, ImagePlus imp2, boolean keep)	Concatenate two images or stacks.
ImagePlus	Concatenator.concatenateHyperstacks(ImagePlus[] images, java.lang.String newTitle, boolean keep)	Obsolete, replaced by concatenate(images,keep) and Concatenator.run(images).
void	RGBStackConverter.convertHyperstack(ImagePlus imp, ImagePlus imp2)
void	StackEditor.convertStackToImages(ImagePlus imp)
static void	RGBStackConverter.convertToRGB(ImagePlus imp)	Converts the specified multi-channel (composite) image to RGB.
static void	Clipboard.copyToSystem(ImagePlus imp)	Copies the contents of the specified image, or selection, to the system clicpboard.
static ByteProcessor	Thresholder.createMask(ImagePlus imp)	Returns an 8-bit binary (0 and 255) threshold mask that has the same dimensions as this image.
ImagePlus	Duplicator.crop(ImagePlus imp)	Returns a copy the current image or stack slice, cropped if there is a selection.
void	FFTMath.doMath(ImagePlus imp1, ImagePlus imp2)
static void	RoiEnlarger.enlarge(ImagePlus imp, int pixels)
void	ContrastEnhancer.equalize(ImagePlus imp)
static void	FFT.filter(ImagePlus imp, ImagePlus filter)	Version of filter() that accepts an ImagePlus for the filter.
static void	FFT.filter(ImagePlus imp, ImageProcessor filter)	Does frequency domain fitering of the speciified image
void	StackReverser.flipStack(ImagePlus imp)
static ImagePlus	FFT.forward(ImagePlus imp)	Performs a forward FHT transform.
static ImageStack	ChannelSplitter.getChannel(ImagePlus imp, int c)	Returns, as an ImageStack, the specified channel, where 'c' must be greater than zero and less than or equal to the number of channels in the image.
java.lang.String	ImageInfo.getExifData(ImagePlus imp)
static java.lang.String[]	FITS_Writer.getHeader(ImagePlus img)	Extracts the original FITS header from the Properties object of the ImagePlus image (or from the current slice label in the case of an ImageStack) and returns it as an array of String objects representing each card.
java.lang.String	ImageInfo.getImageInfo(ImagePlus imp)
static Plot	ZAxisProfiler.getPlot(ImagePlus imp)	Returns a Plot of the selection mean gray value versus slice number.
static Plot	ZAxisProfiler.getPlot(ImagePlus imp, java.lang.String options)	Returns a Plot of the selection mean versus slice number for the specified hyperstack, where 'options' can be "time" or "z-axis".
ImagePlus	GroupedZProjector.groupZProject(ImagePlus imp, int method, int groupSize)
void	EventListener.imageClosed(ImagePlus imp)
void	Orthogonal_Views.imageClosed(ImagePlus imp)
void	EventListener.imageOpened(ImagePlus imp)
void	Orthogonal_Views.imageOpened(ImagePlus imp)
void	EventListener.imageSaved(ImagePlus imp)
void	EventListener.imageUpdated(ImagePlus imp)
void	Orthogonal_Views.imageUpdated(ImagePlus imp)
static void	Zoom.in(ImagePlus imp)
void	StackInserter.insert(ImagePlus imp1, ImagePlus imp2, int x, int y)
static ImagePlus	FFT.inverse(ImagePlus imp)	Performs an inverse FHT transform.
static boolean	Orthogonal_Views.isOrthoViewsImage(ImagePlus imp)
static void	HyperStackMaker.labelHyperstack(ImagePlus imp)
static ImagePlus	CompositeConverter.makeComposite(ImagePlus imp)
void	MontageMaker.makeMontage(ImagePlus imp)
void	MontageMaker.makeMontage(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)	Creates a montage and displays it.
ImagePlus	MontageMaker.makeMontage2(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)	Creates a montage and returns it as an ImagePlus.
static ImagePlus	SubHyperstackMaker.makeSubhyperstack(ImagePlus input, java.lang.String cString, java.lang.String zString, java.lang.String tString)
static ImagePlus	SubHyperstackMaker.makeSubhyperstack(ImagePlus input, java.util.List<java.lang.Integer> cList, java.util.List<java.lang.Integer> zList, java.util.List<java.lang.Integer> tList)
ImagePlus	SubstackMaker.makeSubstack(ImagePlus imp, java.lang.String userInput)
static void	Zoom.maximize(ImagePlus imp)
static ImagePlus	RGBStackMerge.mergeChannels(ImagePlus[] images, boolean keepSourceImages)
ImagePlus	RGBStackMerge.mergeHyperstacks(ImagePlus[] images, boolean keep)
static void	FFT.multiply(ImagePlus imp, ImageProcessor filter)	Multiplies a Fourier domain image by a filter
static void	Zoom.out(ImagePlus imp)
static void	Scaler.record(ImagePlus imp, int w2, int h2, int d2, int method)
void	HyperStackReducer.reduce(ImagePlus imp2)
void	StackReducer.reduceHyperstack(ImagePlus imp, int factor, boolean reduceSlices)
void	StackReducer.reduceStack(ImagePlus imp, int factor)
static ImagePlus	Scaler.resize(ImagePlus imp, int dstWidth, int dstHeight, int dstDepth, java.lang.String options)	Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.
ImagePlus	Slicer.reslice(ImagePlus imp)
void	EventListener.roiModified(ImagePlus img, int id)
ImageProcessor	Straightener.rotateLine(ImagePlus imp, int width)
static ImagePlus	ChannelArranger.run(ImagePlus img, int[] newOrder)	Changes the order of the channels in a hyperstack.
static ImagePlus	Concatenator.run(ImagePlus[] images)	Concatenates two or more images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2)	Concatenates two images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3)	Concatenates three images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4)	Concatenates four images, stacks or hyperstacks.
static ImagePlus	Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4, ImagePlus img5)	Concatenates five images, stacks or hyperstacks.
ImagePlus	Duplicator.run(ImagePlus imp)	Returns a copy of the image, stack or hyperstack contained in the specified ImagePlus.
ImagePlus	Duplicator.run(ImagePlus imp, int firstSlice, int lastSlice)	Returns a new stack containing a subrange of the specified stack.
ImagePlus	Duplicator.run(ImagePlus imp, int firstC, int lastC, int firstZ, int lastZ, int firstT, int lastT)	Returns a new hyperstack containing a possibly reduced version of the input image.
static ImagePlus	ImageCalculator.run(ImagePlus img1, ImagePlus img2, java.lang.String operation)	Performs arithmetic options on two images and returns the result, where 'operation' ("add","subtract", "multiply","divide", "and", "or", "xor", "min", "max", "average", "difference" or "copy") specifies the operation.
ImagePlus	ImageCalculator.run(java.lang.String operation, ImagePlus img1, ImagePlus img2)
static ImagePlus	ImagesToStack.run(ImagePlus[] images)	Converts the images in 'images' to a stack, using the default settings ("copy center" and "titles as labels").
static ImagePlus	SubstackMaker.run(ImagePlus imp, java.lang.String rangeOrList)	Extracts selected slices from a stack to make a new substack.
static ImagePlus	ZProjector.run(ImagePlus imp, java.lang.String method)	Performs projection on the entire stack using the specified method and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".
static ImagePlus	ZProjector.run(ImagePlus imp, java.lang.String method, int startSlice, int stopSlice)	Performs projection using the specified method and stack range, and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".
void	ZProjector.run2(ImagePlus img, java.lang.String arg)
static java.lang.String	GifWriter.save(ImagePlus imp, java.lang.String path)	Saves the specified image in GIF format or as an animated GIF if the image is a stack.
static java.lang.String	JpegWriter.save(ImagePlus imp, java.lang.String path, int quality)	Thread-safe method.
static void	StackWriter.save(ImagePlus imp, java.lang.String directoryPath, java.lang.String options)	Saves the specified image as a sequence of images.
static void	Zoom.set(ImagePlus imp, double magnification)
static void	Zoom.set(ImagePlus imp, double magnification, int x, int y)
void	ZProjector.setImage(ImagePlus imp)	Explicitly set image to be projected.
double	RoiEnlarger.showDialog(ImagePlus imp, double pixels)
ImagePlus	Binner.shrink(ImagePlus imp, int xshrink, int yshrink, int zshrink, int method)
void	HyperStackConverter.shuffle(ImagePlus imp, int order)	Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.
static ImagePlus[]	ChannelSplitter.split(ImagePlus imp)	Splits the specified image into separate channels.
ImageProcessor	Straightener.straighten(ImagePlus imp, Roi roi, int width)
ImageProcessor	Straightener.straightenLine(ImagePlus imp, int width)
ImageProcessor	Straightener.straightenLine(ImagePlus imp, Line line, int width)
ImageStack	Straightener.straightenStack(ImagePlus imp, Roi roi, int width)
void	ContrastEnhancer.stretchHistogram(ImagePlus imp, double saturated)
static ImagePlus	HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t)	Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").
static ImagePlus	HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String mode)	Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").
static ImagePlus	HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String order, java.lang.String mode)	Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.
static void	Zoom.toSelection(ImagePlus imp)
static void	HyperStackConverter.toStack(ImagePlus imp)	Converts the specified hyperstack into a stack.
static void	Zoom.unzoom(ImagePlus imp)
void	PNG_Writer.writeImage(ImagePlus imp, java.lang.String path, int transparentIndex)
ImagePlus	Resizer.zScale(ImagePlus imp, int newDepth, int interpolationMethod)

Constructors in ij.plugin with parameters of type ImagePlus

Constructor	Description
HyperStackReducer(ImagePlus imp)	Constructs a HyperStackReducer using the specified source image.
ZProjector(ImagePlus imp)	Construction of ZProjector with image to be projected.

Uses of ImagePlus in ij.plugin.filter

Fields in ij.plugin.filter declared as ImagePlus

Modifier and Type	Field	Description
protected ImagePlus	ParticleAnalyzer.imp

Methods in ij.plugin.filter that return ImagePlus

Modifier and Type	Method	Description
ImagePlus	Duplicater.duplicateStack(ImagePlus imp, java.lang.String newTitle)	Deprecated.
ImagePlus	Duplicater.duplicateSubstack(ImagePlus imp, java.lang.String newTitle, int first, int last)	Deprecated.
ImagePlus	ParticleAnalyzer.getOutputImage()	Returns the "Outlines", "Masks", "Elipses" or "Count Masks" image, or null if "Nothing" is selected in the "Show:" menu.
static ImagePlus	Analyzer.getRedirectImage(ImagePlus cimp)	Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog, or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

Methods in ij.plugin.filter with parameters of type ImagePlus

Modifier and Type	Method	Description
void	LineGraphAnalyzer.analyze(ImagePlus imp)	Uses extracts a set of coordinate pairs from a digitized line graph.
boolean	ParticleAnalyzer.analyze(ImagePlus imp)	Performs particle analysis on the current slice of the specified image.
boolean	ParticleAnalyzer.analyze(ImagePlus imp, ImageProcessor ip)	Performs particle analysis on the specified ImagePlus and ImageProcessor.
void	Calibrator.calibrate(ImagePlus imp)	Calibrate an image with the function type defined previously.
void	Filler.drawLabel(ImagePlus imp, ImageProcessor ip, int count, java.awt.Rectangle r)
ImagePlus	Duplicater.duplicateStack(ImagePlus imp, java.lang.String newTitle)	Deprecated.
ImagePlus	Duplicater.duplicateSubstack(ImagePlus imp, java.lang.String newTitle, int first, int last)	Deprecated.
java.lang.String	Info.getImageInfo(ImagePlus imp, ImageProcessor ip)	Deprecated.
static ImagePlus	Analyzer.getRedirectImage(ImagePlus cimp)	Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog, or null if "None" is selected, the image was not found or the image is not the same size as currentImage.
static Roi	ThresholdToSelection.run(ImagePlus imp)	Returns a selection created from the thresholded pixels in the specified image, or null if there are no thresholded pixels.
void	RoiWriter.saveRoi(ImagePlus imp)
void	XYWriter.saveXYCoordinates(ImagePlus imp)
static void	Analyzer.setRedirectImage(ImagePlus imp)	Set the "Redirect To" image.
int	Analyzer.setup(java.lang.String arg, ImagePlus imp)
int	AVI_Writer.setup(java.lang.String arg, ImagePlus imp)
int	BackgroundSubtracter.setup(java.lang.String arg, ImagePlus imp)
int	Benchmark.setup(java.lang.String arg, ImagePlus imp)
int	Binary.setup(java.lang.String arg, ImagePlus imp)
int	Calibrator.setup(java.lang.String arg, ImagePlus imp)
int	Convolver.setup(java.lang.String arg, ImagePlus imp)
int	Duplicater.setup(java.lang.String arg, ImagePlus imp)	Deprecated.
int	EDM.setup(java.lang.String arg, ImagePlus imp)	Prepare for processing; also called at the very end with argument 'final' to show any newly created output image.
int	FFTCustomFilter.setup(java.lang.String arg, ImagePlus imp)
int	FFTFilter.setup(java.lang.String arg, ImagePlus imp)
int	Filler.setup(java.lang.String arg, ImagePlus imp)
int	Filters.setup(java.lang.String arg, ImagePlus imp)
int	FractalBoxCounter.setup(java.lang.String arg, ImagePlus imp)
int	GaussianBlur.setup(java.lang.String arg, ImagePlus imp)	Method to return types supported
int	ImageMath.setup(java.lang.String arg, ImagePlus imp)
int	ImageProperties.setup(java.lang.String arg, ImagePlus imp)
int	Info.setup(java.lang.String arg, ImagePlus imp)	Deprecated.
int	LineGraphAnalyzer.setup(java.lang.String arg, ImagePlus imp)
int	LutApplier.setup(java.lang.String arg, ImagePlus imp)
int	LutViewer.setup(java.lang.String arg, ImagePlus imp)
int	MaximumFinder.setup(java.lang.String arg, ImagePlus imp)	Method to return types supported
int	ParticleAnalyzer.setup(java.lang.String arg, ImagePlus imp)
int	PlugInFilter.setup(java.lang.String arg, ImagePlus imp)	This method is called once when the filter is loaded.
int	Printer.setup(java.lang.String arg, ImagePlus imp)
int	RankFilters.setup(java.lang.String arg, ImagePlus imp)	Setup of the PlugInFilter.
int	RGBStackSplitter.setup(java.lang.String arg, ImagePlus imp)
int	RoiWriter.setup(java.lang.String arg, ImagePlus imp)
int	Rotator.setup(java.lang.String arg, ImagePlus imp)
int	SaltAndPepper.setup(java.lang.String arg, ImagePlus imp)
int	ScaleDialog.setup(java.lang.String arg, ImagePlus imp)
int	Shadows.setup(java.lang.String arg, ImagePlus imp)
int	StackLabeler.setup(java.lang.String arg, ImagePlus imp)
int	ThresholdToSelection.setup(java.lang.String arg, ImagePlus imp)
int	Transformer.setup(java.lang.String arg, ImagePlus imp)
int	Translator.setup(java.lang.String arg, ImagePlus imp)
int	UnsharpMask.setup(java.lang.String arg, ImagePlus imp)	Method to return types supported
int	Writer.setup(java.lang.String arg, ImagePlus imp)	Deprecated.
int	XYWriter.setup(java.lang.String arg, ImagePlus imp)
int	BackgroundSubtracter.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	Binary.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
boolean	Calibrator.showDialog(ImagePlus imp)
int	Convolver.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	EDM.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)	Called by the PlugInFilterRunner after setup.
int	ExtendedPlugInFilter.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)	This method is called after setup(arg, imp) unless the DONE flag has been set.
int	GaussianBlur.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)	Ask the user for the parameters
int	ImageMath.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	MaximumFinder.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	RankFilters.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	Rotator.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	StackLabeler.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	Translator.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	UnsharpMask.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)	Ask the user for the parameters
void	RGBStackSplitter.split(ImagePlus imp)	Deprecated; replaced by ij.plugin.ChannelSplitter.
void	AVI_Writer.writeImage(ImagePlus imp, java.lang.String path, int compression, int jpegQuality)	Writes an ImagePlus (stack) as AVI file.

Constructors in ij.plugin.filter with parameters of type ImagePlus

Constructor	Description
Analyzer(ImagePlus imp)	Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.
Analyzer(ImagePlus imp, int measurements, ResultsTable rt)	Construct a new Analyzer using an ImagePlus object and private measurement options and a ResultsTable.
Analyzer(ImagePlus imp, ResultsTable rt)	Construct a new Analyzer using an ImagePlus object and a ResultsTable.

Uses of ImagePlus in ij.plugin.frame

Methods in ij.plugin.frame that return ImagePlus

Modifier and Type	Method	Description
ImagePlus	SyncWindows.getImageFromVector(int n)	Get ImagePlus from Windows-Vector vwins.

Methods in ij.plugin.frame with parameters of type ImagePlus

Modifier and Type	Method	Description
void	RoiManager.add(ImagePlus imp, Roi roi, int n)	Adds the specified ROI to the list.
int	SyncWindows.getIndexOfImage(ImagePlus image)	Get index of "image" in vector of synchronized windows, if image is in vector.
void	Recorder.imageClosed(ImagePlus imp)
void	SyncWindows.imageClosed(ImagePlus imp)	Implementation of ImageListener interface: update window list, if image is opened or closed
void	ThresholdAdjuster.imageClosed(ImagePlus imp)
void	Recorder.imageOpened(ImagePlus imp)
void	SyncWindows.imageOpened(ImagePlus imp)	Implementation of ImageListener interface: update window list, if image is opened or closed
void	ThresholdAdjuster.imageOpened(ImagePlus imp)
void	Recorder.imageUpdated(ImagePlus imp)
void	SyncWindows.imageUpdated(ImagePlus imp)
void	ThresholdAdjuster.imageUpdated(ImagePlus imp)
void	RoiManager.moveRoisToOverlay(ImagePlus imp)	Moves all the ROIs to the specified image's overlay.
ResultsTable	RoiManager.multiMeasure(ImagePlus imp)	This method measures the selected ROIs, or all ROIs if none are selected, on all the slices of a stack and returns a ResultsTable arranged with one row per slice.
static ResultsTable	RoiManager.multiMeasure(ImagePlus imp, Roi[] rois, boolean appendResults)
boolean	RoiManager.runCommand(ImagePlus imp, java.lang.String cmd)	Using the specified image, runs the ROI Manager "Add", "Add & Draw", "Update", "Delete", "Measure", "Draw", "Show All", "Show None", "Fill", "Deselect", "Select All", "Combine", "AND", "XOR", "Split", "Sort" or "Multi Measure" command.
void	RoiManager.select(ImagePlus imp, int index)	Assigns the ROI at the specified index to 'imp'.
void	RoiManager.selectAndMakeVisible(ImagePlus imp, int index)
void	SyncWindows.setCursor(ImagePlus imp, Roi cursor)
void	RoiManager.setEditMode(ImagePlus imp, boolean editMode)

Uses of ImagePlus in ij.plugin.tool

Methods in ij.plugin.tool with parameters of type ImagePlus

Modifier and Type	Method	Description
void	PlugInTool.mouseClicked(ImagePlus imp, java.awt.event.MouseEvent e)
void	ArrowTool.mouseDragged(ImagePlus imp, java.awt.event.MouseEvent e)
void	BrushTool.mouseDragged(ImagePlus imp, java.awt.event.MouseEvent e)
void	OverlayBrushTool.mouseDragged(ImagePlus imp, java.awt.event.MouseEvent e)
void	PixelInspectionTool.mouseDragged(ImagePlus imp, java.awt.event.MouseEvent e)
void	PlugInTool.mouseDragged(ImagePlus imp, java.awt.event.MouseEvent e)
void	RoiRotationTool.mouseDragged(ImagePlus imp, java.awt.event.MouseEvent e)
void	PlugInTool.mouseEntered(ImagePlus imp, java.awt.event.MouseEvent e)
void	PlugInTool.mouseExited(ImagePlus imp, java.awt.event.MouseEvent e)
void	PlugInTool.mouseMoved(ImagePlus imp, java.awt.event.MouseEvent e)
void	ArrowTool.mousePressed(ImagePlus imp, java.awt.event.MouseEvent e)
void	BrushTool.mousePressed(ImagePlus imp, java.awt.event.MouseEvent e)
void	OverlayBrushTool.mousePressed(ImagePlus imp, java.awt.event.MouseEvent e)
void	PixelInspectionTool.mousePressed(ImagePlus imp, java.awt.event.MouseEvent e)
void	PlugInTool.mousePressed(ImagePlus imp, java.awt.event.MouseEvent e)
void	RoiRotationTool.mousePressed(ImagePlus imp, java.awt.event.MouseEvent e)
void	ArrowTool.mouseReleased(ImagePlus imp, java.awt.event.MouseEvent e)
void	BrushTool.mouseReleased(ImagePlus imp, java.awt.event.MouseEvent e)
void	OverlayBrushTool.mouseReleased(ImagePlus imp, java.awt.event.MouseEvent e)
void	PlugInTool.mouseReleased(ImagePlus imp, java.awt.event.MouseEvent e)
void	RoiRotationTool.mouseReleased(ImagePlus imp, java.awt.event.MouseEvent e)

Uses of ImagePlus in ij.process

Methods in ij.process that return ImagePlus

Modifier and Type	Method	Description
ImagePlus	ColorSpaceConverter.LabToRGB(ImagePlus img)	Converts a Lab stack into an RGB image.
ImagePlus	ColorSpaceConverter.RGBToLab(ImagePlus img)	Converts an RGB image into a Lab stack.

Methods in ij.process with parameters of type ImagePlus

Modifier and Type	Method	Description
static void	ImageConverter.convertAndCalibrate(ImagePlus imp, java.lang.String type)
ImagePlus	ColorSpaceConverter.LabToRGB(ImagePlus img)	Converts a Lab stack into an RGB image.
ImagePlus	ColorSpaceConverter.RGBToLab(ImagePlus img)	Converts an RGB image into a Lab stack.
void	BinaryInterpolator.run(ImagePlus image, Roi[] rois)

Constructors in ij.process with parameters of type ImagePlus

Constructor	Description
ImageConverter(ImagePlus imp)	Constructs an ImageConverter based on an ImagePlus object.
StackConverter(ImagePlus imp)
StackStatistics(ImagePlus imp)	Creates a StackStatistics object from a stack, using 256 histogram bins and the entire stack pixel value range.
StackStatistics(ImagePlus imp, int nBins, double xMin, double xMax)	Creates a StackStatistics object from a stack, using the specified histogram bin count and x-axis range (pixel value tange).

Uses of ImagePlus in ij.util

Methods in ij.util with parameters of type ImagePlus

Modifier and Type	Method	Description
static java.lang.String	DicomTools.getTag(ImagePlus imp, java.lang.String id)	Returns the value (as a string) of the specified DICOM tag id (in the form "0018,0050") of the specified image or stack slice.