Module ij

Package ij.plugin

Interface Summary

Interface	Description
PlugIn	Plugins that acquire images or display windows should implement this interface.

Class Summary

Class	Description
AboutBox	This plugin implements the Help/About ImageJ command by opening about.jpg in ij.jar, scaling it 600% and adding text to an overlay.
Animator	This plugin animates stacks.
AppearanceOptions	This plugin implements the Edit/Options/Appearance command.
ArrowToolOptions	This plugin implements the Edit/Options/Arrow Tool command.
AVI_Reader	ImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 & 16 bit grayscale - uncompressed 24 & 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 and 4:2:0 compressed formats (i.e., formats with full luminance resolution, but reduced chroma resolution - png or jpeg-encoded individual frames.
BatchConverter	This plugin implements the File/ /Convert command, which converts the images in a folder to a specified format.
BatchMeasure	This plugin implements the File/Batch/Measure command, which measures all the images in a user-specified folder.
BatchProcessor	This plugin implements the File/Batch/Macro and File/Batch/Virtual Stack commands.
Benchmark	Implements the Plugins/Utilities/Run Benchmark command.
Binner	This plugin implements the Image/Transform/Bin command.
BMP_Reader	This plugin reads BMP files.
BMP_Writer	Implements the File/Save As/BMP command.
BrowserLauncher	This plugin implements the File/Import/URL command and the commands in the Help menu that open web pages.
CalibrationBar	This plugin implements the Analyze/Tools/Calibration Bar command.
CanvasResizer	This plugin implements the Image/Adjust/Canvas Size command.
ChannelArranger	This plugin implements the Image/Colors/Arrange Channels command, which allows the user to change the order of channels.
ChannelSplitter	This plugin implements the Image/Color/Split Channels command.
CircularRoiMaker	This class implements the Process/FFT/Make Circular Selection command.
ClassChecker	Checks for duplicate class and JAR files in the plugins folders.
Clipboard	Copies/pastes images to/from the system clipboard.
Colors	This plugin implements most of the Edit/Options/Colors command.
CommandFinder
CommandLister	This class is used by the Plugins/Shortcuts/List Shortcuts command to display a list keyboard shortcuts.
Commands	Runs miscellaneous File and Window menu commands.
Compiler	Compiles and runs plugins using the javac compiler.
CompositeConverter	This plugin implements the Image/Color/Make Composite command.
Concatenator	This plugin, which concatenates two or more images or stacks, implements the Image/Stacks/Tools/Concatenate command.
ContrastEnhancer	Implements ImageJ's Process/Enhance Contrast command.
ControlPanel	ControlPanel.
Converter	Implements the conversion commands in the Image/Type submenu.
Coordinates	The plugin implements the Image/Adjust/Coordinates command.
DICOM	This plugin decodes DICOM files.
Distribution	This plugin implements the Analyze/Distribution command.
DragAndDrop	This class opens images, roi's, luts and text files dragged and dropped on the "ImageJ" window.
Duplicator	This plugin implements the Image/Duplicate command.
EventListener	This plugin implements the Plugins/Utilities/Monitor Events command.
FFT	This class implements the FFT, Inverse FFT and Redisplay Power Spectrum commands in the Process/FFT submenu.
FFTMath	The class implements the Process/FFT/Math command.
FileInfoVirtualStack	This plugin opens a multi-page TIFF file, or a set of raw images, as a virtual stack.
Filters3D
FITS_Reader	Opens and displays FITS images.
FITS_Writer	This plugin saves a 16 or 32 bit image in FITS format.
FolderOpener	Implements the File/Import/Image Sequence command, which opens a folder of images as a stack.
GaussianBlur3D
GelAnalyzer	This plugin generates gel profile plots that can be analyzed using the wand tool.
GIF_Reader	This plugin opens GIFs and Animated GIFs.
GifWriter	Saves the active image in GIF format, or as an animated GIF if the image is a stack.
Grid	This class implements the Analyze/Tools/Grid command.
GroupedZProjector	Implements the Image/Stacks/Tools/Grouped Z Project command.
Histogram	This plugin implements the Analyze/Histogram command.
Hotkeys	Implements the Plugins/Hotkeys/Create Shortcut and Remove commands.
HyperStackConverter	Implements the "Stack to HyperStack", "RGB to HyperStack" and "HyperStack to Stack" commands.
HyperStackMaker	This plugin implements the File/New/Hyperstack command.
HyperStackReducer	Implements the Image/HyperStacks/Reduce Dimensionality command.
ImageCalculator	This plugin implements the Process/Image Calculator command.
ImageInfo	This plugin implements the Image/Show Info command.
ImageJ_Updater	This plugin implements the Help/Update ImageJ command.
ImagesToStack	Implements the Image/Stacks/Images to Stack" command.
JavaProperties	Displays the Java system properties in a text window.
JavaScriptEvaluator	Implements the text editor's Macros/Run command, and the IJ.runMacroFile() method, when the file name ends with ".js".
JpegWriter	The File/Save As/Jpeg command (FileSaver.saveAsJpeg() method) uses this plugin to save images in JPEG format.
ListVirtualStack	This plugin opens images specified by list of file paths as a virtual stack.
LUT_Editor
LutLoader	Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
Macro_Runner	This class runs macros and scripts installed in the Plugins menu as well as macros and scripts opened using the Plugins/Macros/Run command.
MacroInstaller	This plugin implements the Plugins/Macros/Install Macros command.
MeasurementsWriter	Saves a table as a csv or tab-delimited text file.
Memory	This plugin implements the Edit/Options/Memory command.
MontageMaker	Implements the Image/Stacks/Make Montage command.
NewPlugin	This class creates a new macro or the Java source for a new plugin.
NextImageOpener
Options	This plugin implements most of the commands in the Edit/Options sub-menu.
Orthogonal_Views	This plugin projects dynamically orthogonal XZ and YZ views of a stack.
OverlayCommands	This plugin implements the commands in the Image/Overlay menu.
OverlayLabels	This plugin implements the Image/Overlay/Labels command.
PGM_Reader	This plugin opens PxM format images.
PluginInstaller	Installs plugins dragged and dropped on the "ImageJ" window, or plugins, macros or scripts opened using the Plugins/Install command.
PlugInInterpreter	Plugins that run scripts (e.g., BeanShell, Jython) extend this class.
PNG_Writer	Saves in PNG format using the ImageIO classes.
PNM_Writer
PointToolOptions	This plugin implements the Edit/Options/Point Tool command.
Profiler	Implements the Analyze/Plot Profile and Edit/Options/Profile Plot Options commands.
Projector	This plugin creates a sequence of projections of a rotating volume (stack of slices) onto a plane using nearest-point (surface), brightest-point, or mean-value projection or a weighted combination of nearest- point projection with either of the other two methods (partial opacity).
ProxySettings	This plugin implements the Plugins/Utilities/Proxy Settings command.
Raw	This plugin implements the File/Import/Raw command.
RectToolOptions	This plugin implements the rounded rectangle tool dialog box.
Resizer	This plugin implements the Edit/Crop and Image/Adjust/Size commands.
RGBStackConverter	Converts a 2 or 3 slice stack, or a hyperstack, to RGB.
RGBStackMerge	This plugin implements the Image/Color/Merge Channels command.
RoiEnlarger	This plugin, which enlarges or shrinks selections, implements the Edit/Selection/Enlarge command.
RoiInterpolator	This class interpolates between ROIs in the ROI Manager.
RoiReader	Opens ImageJ, NIH Image and Scion Image for windows ROI outlines.
RoiRotator	This plugin implements the Edit/Selection/Rotate command.
RoiScaler	This plugin implements the Edit/Selection/Scale command.
ScaleBar	This plugin implements the Analyze/Tools/Scale Bar command.
Scaler	This plugin implements the Image/Scale command.
ScreenGrabber	This plugin implements the Plugins/Utilities/Capture Screen and Plugins/Utilities/Capture Image commands.
Selection	This plugin implements the commands in the Edit/Selection submenu.
SimpleCommands	This plugin implements the Plugins/Utilities/Unlock, Image/Rename and Plugins/Utilities/Search commands.
Slicer	Implements the Image/Stacks/Reslice command.
SpecifyROI	This plugin implements the Edit/Selection/Specify command.
Stack_Statistics	This plugin implements the Image/Stacks/Statistics command.
StackCombiner	This plugin implements the Image/Stacks/Combine command.
StackEditor	Implements the AddSlice, DeleteSlice and "Stack to Images" commands.
StackInserter	This plugin, which implements the Image/Stacks/Tools/Insert command, inserts an image or stack into another image or stack.
StackMaker	The plugin implements the Image/Stacks/Tools/Montage to Stack command.
StackPlotter
StackReducer	This plugin implements the Image/Stacks/Tools/Reduce command.
StackReverser	This plugin implements the Image/Transform/Flip Z and Image/Stacks/Tools/Reverse commands.
StackWriter	This plugin, which saves the images in a stack as separate files, implements the File/Save As/Image Sequence command.
Startup	This plugin implements the Edit/Options/Startup command.
Straightener	This plugin implements the Edit/Selection/Straighten command.
SubHyperstackMaker	This plugin is used by the Image/Stacks/Tools/Make Substack command to create substacks of hyperstacks.
SubstackMaker	This plugin implements the Image/Stacks/Tools/Make Substack command.
SurfacePlotter
Text	This plugin implements the Edit/Options/Fonts command and the dialog displayed when you double click on the text tool.
TextFileReader	This plugin displays the contents of a text file in a window.
TextReader	This plugin opens a tab or comma delimeted text file as an image.
TextWriter	This plugin implements the File/Save As/Text command, which saves the contents of Editor windows and TextWindows (e.g., "Log" and "Results").
ThreadLister	Displays thread information in a text window.
Thresholder	This plugin implements the Process/Binary/Make Binary and Convert to Mask commands.
URLOpener	Opens TIFFs, ZIP compressed TIFFs, DICOMs, GIFs and JPEGs using a URL.
WandToolOptions	This plugin implements the Edit/Options/Wand Tool command.
WindowOrganizer	This class implements the Window menu's "Show All", "Main Window", "Cascade" and "Tile" commands.
XY_Reader	This plugin implements the File/Import/XY Coordinates command.
XYCoordinates	Writes the XY coordinates and pixel values of all non-background pixels to a tab-delimited text file.
ZAxisProfiler	Implements the Image/Stacks/Plot Z-axis Profile command, which plots the selection mean gray value versus slice number.
Zoom	This plugin implements the commands in the Image/Zoom submenu.
ZProjector	This plugin performs a z-projection of the input stack.