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ImgLib2 Examples

2,595 bytes removed, 15:09, 26 November 2013
Updated example code
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.img.Img;
import net.imglib2.img.array.ArrayImgFactory;
import net.imglib2.img.display.imagej.ImageJFunctions;
import io.scif.img.ImgIOException;
{
// open file as float
Img< FloatType > img = new ImgOpener().openImg( "DrosophilaWing.tif", new ArrayImgFactory< FloatType >(), new FloatType() );
// display image
}
}
 
</source>
'''[https://github.com/imagej/imglib/blob/master/examples/src/main/java/Example3a1.java Example3a1.java]'''
<source lang="java">
import ij.ImageJ;
import java.util.Iterator;
import net.imglib2.Cursor;
import net.imglib2.RandomAccess;
import net.imglib2.exception.IncompatibleTypeException;
import net.imglib2.img.Img;
import io.scif.img.ImgIOException;
{
public < T extends RealType< T > & NativeType< T > > Example3a1()
throws ImgIOException, IncompatibleTypeException
{
// open with ImgOpener (he will decide which Img is best)
}
public static void main( String[] args ) throws ImgIOException, IncompatibleTypeException
{
// open an ImageJ window
new ImageJ();
 
// run the example
new Example3a1();
'''[https://github.com/imagej/imglib/blob/master/examples/src/main/java/Example3a2.java Example3a2.java]'''
<source lang="java">
import ij.ImageJ;
 
import java.util.ArrayList;
import java.util.Iterator;
public static void main( String[] args )
{
// open an ImageJ window
new ImageJ();
 
// run the example
new Example3a2();
'''[https://github.com/imagej/imglib/blob/master/examples/src/main/java/Example3a3.java Example3a3.java]'''
<source lang="java">
import ij.ImageJ;
import net.imglib2.Cursor;
import net.imglib2.IterableInterval;
import net.imglib2.Point;
import net.imglib2.exception.IncompatibleTypeException;
import net.imglib2.img.Img;
import io.scif.img.ImgIOException;
{
public < T extends RealType< T > & NativeType< T > > Example3a3()
throws ImgIOException, IncompatibleTypeException
{
// open with ImgOpener (he will decide which Img is best)
}
public static void main( String[] args ) throws ImgIOException, IncompatibleTypeException
{
// open an ImageJ window
new ImageJ();
 
// run the example
new Example3a3();
'''[https://github.com/imagej/imglib/blob/master/examples/src/main/java/Example3b.java Example3b.java]'''
<source lang="java">
/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2013 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
* Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
* Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
* Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
* Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*
* The views and conclusions contained in the software and documentation are
* those of the authors and should not be interpreted as representing official
* policies, either expressed or implied, of any organization.
* #L%
*/
import ij.ImageJ;
import net.imglib2.exception.IncompatibleTypeException;
import net.imglib2.img.Img;
import io.scif.img.ImgIOException;
import io.scif.img.ImgOpener;
import net.imglib2.img.array.ArrayImgFactory;
import net.imglib2.type.NativeType;
import net.imglib2.type.numeric.RealType;
{
public < T extends RealType< T > & NativeType< T > > Example3b() throws
ImgIOException, IncompatibleTypeException
{
// open with ImgOpener using an ArrayImgFactory
final Img< T > img = new ImgOpener().openImg( "DrosophilaWing.tif" , new ArrayImgFactory< T >() );
// compute average of the image
}
public static void main( final String[] args ) throws ImgIOException, IncompatibleTypeException
{
// open an ImageJ window
new ImageJ();
 
// run the example
new Example3b();
}
}
 
</source>
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