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TrakEM2 Scripting

471 bytes added, 03:48, 8 April 2011
Jython scripts for TrakEM2
*[http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=plugins/Examples/TrakEM2_Example_Scripts/T2_Select_All.py;hb=HEAD Select All] objects in TrakEM2.
*[http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=plugins/Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py;hb=HEAD Measure AreaList] in TrakEM2.
* A [https://github.com/acardona/Fiji-TrakEM2-scripts/tree/master/TrakEM2 collection of scripts for TrakEM2], hosted by github. Mostly related to inspecting and analyzing [http://pacific.mpi-cbg.de/javadoc/ini/trakem2/display/Treeline.html Treeline], [http://pacific.mpi-cbg.de/javadoc/ini/trakem2/display/AreaTree.html AreaTree] and [http://pacific.mpi-cbg.de/javadoc/ini/trakem2/display/Connector.html Connector] instances, when used for neural circuit reconstruction.
[[Category:Scripting]]
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