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SNT: Manual

64 bytes added, 12 January
move quick measurements and create mesaure...
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===Analysis===
* {{bc|Analysis|Path Order Analysis}} Produces a table and plot from morphometric statistics on the group of paths associated with each Branch Order. See [https://imagej.net/SNT:_Analysis#Path_Order_Analysis Path Order Analysis] for details.* {{bc|Analysis|Sholl Analysis...}} Brings up the [https://imagej.net/Sholl_Analysis Sholl Analysis] dialog with a pre-defined set of focal points the user can choose from. See [https://imagej.net/SNT:_Analysis#Sholl_Analysis Sholl Analysis..] for details.]* {{bc|Analysis|Sholl Analysis (by Focal Point)...}} Allows precise positioning of the focal point used by Sholl Analysis. See [https://imagej.net/SNT:_Analysis#Sholl_Analysis_.28by_Focal_Point.29 Sholl ] for details.* {{bc|Strahler Analysis}} Conducts [https://imagej.net/Strahler_Analysis Strahler Analysis ] on existing paths, producing a table of analysis results and a Strahler plot. See [https://imagej.net/SNT:_Analysis#Strahler_Analysis] for details.* {{bc|ANalysis|Measure...}} Provides a comprehensive selection of measurements to apply to one connected component (by Focal Pointi.e., rooted tree structure)from the Path Manager. See [https://imagej.net/SNT:_Analysis#Measurements] for details.* {{bc|Quick Measurements|}} Shows a table with summary statistics for all existing paths. To measure only selected paths, use {{bc|Analyze|Measure}} in the Path Manager. See [https://imagej.net/SNT:_Analysis#Measurements]for details.
===Utilities===
* {{bc|Quick Measurements|}} Shows a table with summary statistics for all existing paths. To measure only selected paths, use {{bc|Analyze|Measure}} in the Path Manager.
* {{bc|Sholl Analysis...}} Shows a help menu which describes how to conduct [[Simple_Neurite_Tracer:_Sholl_analysis|Sholl Analysis]] from within SNT on existing paths.
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* {{bc|Strahler Analysis}} Conducts Strahler Analysis on existing paths, producing a table of analysis results and a Strahler plot.<div align="left"><ul> <li style="display:inline-block;"> [[Image:SNT-Strahler-Analysis-Table.png|none|thumb|200px|Strahler Analysis table for OP_1]] </li><li style="display:inline-block;"> [[Image:SNT-Strahler-Analysis-Plot.png|none|thumb|200px|Strahler Analysis plot for OP_1]] </li></ul></div>
* {{bc|Reconstruction Plotter...}} Plots a dynamic 2D projection of all existing paths. A control panel is included which allows adjustment of the spatial orientation of the tracing. If paths are assigned color tags, use {{bc|Actions|Render final (colorized) plot}} from the control panel to render the (static) plot with color-mapped paths, with the final orientation matching that of the dynamic plot.
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