Skip to content, Skip to search

Changes

DS4H Image Alignment

366 bytes removed, 21 August
no edit summary
| maintainer = {{DS4H}}
| author = Stefano Belli; Antonella Carbonaro; Filippo Piccinini
 | source = {{GitHub|org=fijiLuxor001|repo=VIB|source=Align_Image.javaDS4H-Image-Alignment}}
| released = 08/06/2019
| latest version = 13/08/2019
| category = [[:Category:Registration]]
}}
 
== Description ==
"Data Science for Health (DS4H) Image Alignment" is a user-friendly tool freely provided as an ImageJ/Fiji plugin. With DS4H Image Alignment,developed to align biological images can be easily aligned (i.e. co-registered) by defining with a few clicks some well manually specifying visible reference marks.  The implemented Warping of the single original images is done according to a least-squares method automatically that approximates the solution of the mathematical overdetermined system, so to define the registration matrix then used for aligning the different images. It also considers rotations and scale changes in case of object dilation/shrink. Finally, it provides an iterative subroutine for a fine alignment, to easily reach a very good image co-registration quality.  DS4H Image Alignment has been implemented in Java as a plugin for ImageJ/Fiji. It works with “.svs” files, but also all the medical imaging formats included in Bio-Formats. It is freely available at: www.filippopiccinini.it/DS4H-IA.html, together with a sample dataset and a video tutorial.
It also considers rotations and scale changes in case the images to be aligned are dilated/shrinked.
Finally, it provides an iterative subroutine for a fine alignment, to easily reach good image co-registration quality.
== Image support ==
33
edits