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BigWarp

743 bytes added, 17 May
how to warp points in a csv file
==== Warp 2d ImageJ ROIs ====
Download and install [https://githubraw.githubusercontent.com/saalfeldlab/bigwarp/blob/master/scripts/Apply_Bigwarp_Xfm_IjRoi2d.groovy this script].
Usage:
Note, at this time ImageJ ROIs are 2D objects. We recommend using another approach for 3D regions of interest.
 
==== Warp points in a csv file ====
 
Download and install [https://raw.githubusercontent.com/saalfeldlab/bigwarp/master/scripts/Apply_Bigwarp_Xfm_csvPts.groovy this script].
 
Usage:
# Run the script download-able above.
# Select the csv file that stores bigwarp landmarks.
# Select the csv file storing the points you want to transform.
# Select the location for csv file you want the results to be stored in.
# Indicate whether you want to transform the points from moving to target space or vice versa.
# Click OK.
 
Note the input csv must be formatted:
 
x1,y1,z1
x2,y2,z2
...
xN,yN,zN
 
 
without quotation marks, spaces, or any other characters. Csv files storing bigwarp landmarks will not work as input to this script.
= Tutorials =
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