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SNT: Manual

291 bytes added, 16:36, 14 May 2019
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Lists commands for I/O operations. Most are self-explanatory. Noteworthy:
* {{bc|Choose Tracing Image|}} Specifies the image to trace on. To trace on an image currently open in ImageJ, use ''From Open Image...''. A prompt with the currently open images will appear, allowing selection of one. To browse for an image, use ''From File...''.
<div align="left"><ul> <li style="display:inline-block;"> [[Image:SNT-From-Open-Image-Prompt.png|leftnone|thumb|200px|"From Open Image..." prompt]]</li></ul>{{clear}}</div>
* {{bc|Import| Labels (AmiraMesh)}} Allows import and rendering of AmiraMesh files, the native file format of the [https://amira.zib.de/ Amira] data visualization software.
<div align="left"><ul> <li style="display:inline-block;"> [[Image:SNT-Amira-Mesh-Example-Image.png|leftnone|thumb|200px|AmiraMesh Fly brain]]</li></ul>{{clear}}</div>
* {{bc|Import| Remote Databases|}} Allows import of neuronal reconstructions from the [http://www.flycircuit.tw/ FlyCircuit], [http://ml-neuronbrowser.janelia.org/ MouseLight] and [http://neuromorpho.org/ NeuroMorpho] remote databases.
<div align="left"><ul> <li style="display:inline-block;"> [[Image:SNT-MouseLight-Remote-Loader-Prompt.png|leftnone|thumb|200px|MouseLight reconstruction loader prompt]]</li></ul>{{clear}}</div>
* {{bc|Export (All Paths)}} Allows export of all traced paths in the [http://www.neuronland.org/NLMorphologyConverter/MorphologyFormats/SWC/Spec.html SWC] file format, a widely used standard for representing neuronal reconstructions which is supported by most annotation and visualization software. Additionally, useful numeric properties of paths can be stored in a CSV file by choosing the ''CSV Properties...'' export option.
<div align="left"><ul> <li style="display:inline-block;"> [[Image:SNT-Path-CSV-Properties-Example-Spreadsheet.png|leftnone|thumb|600px|OP_1 CSV Properties snapshot in LibreOffice]]</li></ul></div>
{{clear}}
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