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Sholl Analysis

15 bytes removed, 18:32, 13 December 2018
Fix "list of update sites" links
:* [[Anisotropic_Diffusion_2D|Anisotropic Diffusion]], <span style="border-bottom:1px dotted #ccc;">Plugins▷ Process▷ Anisotropic Diffusion 2D</span>
:* Sobel Edge Detection, e.g., <span style="border-bottom:1px dotted #ccc;">Process▷ Find Edges</span>
:* Shen-Castan Edge Detector ([[BAR]] [[List_of_update_sites{{ListOfUpdateSites|update site]]}}), <span style="border-bottom:1px dotted #ccc;">BAR▷ Segmentation▷</span>
:* Frequency filters, e.g., <span style="border-bottom:1px dotted #ccc;">Process▷ FFT▷ Bandpass Filter...</span>
<span id="Uneven_Illumination"></span>
:* [[RATS:_Robust_Automatic_Threshold_Selection|Robust Automatic Threshold Selection]], <span style="border-bottom:1px dotted #ccc;">Plugins▷ Segmentation▷</span>
:* [[Level_Sets|Level Sets]], <span style="border-bottom:1px dotted #ccc;">Plugins▷ Segmentation▷</span>
:* [[Morphological Segmentation]] (IJPB-plugins [[List_of_update_sites{{ListOfUpdateSites|update site]]}}), <span style="border-bottom:1px dotted #ccc;">Plugins▷ Segmentation▷</span>:* [[Squassh]], split-Bregman Image Segmentation (Segmentation and Quantification of Sub-cellular Shapes, MOSAIC ToolSuite [[List_of_update_sites{{ListOfUpdateSites|update site]]}}), , <span style="border-bottom:1px dotted #ccc;">Plugins▷ Mosaic▷ Segmentation▷</span>
<span id="Semi-Automated_Segmentation"></span>
;Semi-Automated Segmentation
:Object detection and image segmentation in images with poor signal-to-noise will likely require decisions taken by a human operator. This is frequently done using hand-crafted workflows using either ImageJ's built-in tools or external add ons. Examples:
:* [[Lasso selection|Blow/Lasso Tool]], <span style="border-bottom:1px dotted #ccc;">Plugins▷ Segmentation▷</span>
:* Scripts from the [[BAR]] [[List_of_update_sites{{ListOfUpdateSites|update site]]}}, <span style="border-bottom:1px dotted #ccc;">BAR▷ [[BAR#Segmentation|Segmentation]]▷</span>
{{Tip
|tip = For additional image processing tools have a look at the growing list of [[List_of_update_sites{{ListOfUpdateSites|update sites]]}}. For more information on image processing have a look at [[:Category:Tutorials|tutorials]], [[:Category:Segmentation|segmentation]] and the [http://imagej.net/docs/guide/ ImageJ User Guide].
}}
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