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BigWarp

746 bytes added, 14:52, 19 November 2018
start of documenting scripts to apply transformations
The exported image will have the same dimensions as the target image.
''Note: Take care when exporting very large data sets as they can cause out-of-memory exceptions.''
 
=== Apply transforms ===
 
Often, it is important to apply transforms estimated with one image to other images in the same space.
 
If you have moving and target images open in Fiji [https://github.com/saalfeldlab/bigwarp/blob/master/scripts/Apply_Bigwarp_Xfm.groovy this script] to transform the moving image into the space of the target image. You will need to provide a file containing the saved landmark point pairs.
 
To manually specify the field-of-view (FOV) of the target space, use [https://github.com/saalfeldlab/bigwarp/blob/master/scripts/Apply_Bigwarp_Xfm_FOV.groovy this script]
 
To make the scripts above appear in your Fiji Plugins menu, simply copy them into the <code>/plugins/Scripts folder</code> in your Fiji installation.
= Tutorials =
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