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SPIM Workflow Manager For HPC

1 byte removed, 06:22, 31 August 2018
Usage
Once a job execution is selected by the user, the configuration file is sent to the cluster via HEAppE, which is responsible for the job life cycle from this point on. The user can display a detailed progress dashboard showing current states of all individual computational tasks for the selected job as well as output logs useful for debugging.
[[File:ui_screens.PNG|1000 px1000px]]
Following a successfully finished pipeline, the user can interactively examine the processed SPIM image data using the BigDataServer [https://imagej.net/BigDataViewer] as well as download resultant data and a summary file containing key information about the performed job. Importantly, the user can edit the corresponding local configuration file in a common text editor, and restart an interrupted, finished, or failed job.
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