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Sholl Analysis

70 bytes removed, 14:00, 25 October 2016
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== Related Resources ==
* [[:Category:Neuroanatomy|Neuroanatomy]] resources, including:** '''[[Simple_Neurite_Tracer|Simple Neurite Tracer]] (SNT)''' Mark Longair's plugin The remarkable ImageJ framework for semi-automated of two- and three-dimensional tracing. Data from [[Simple_Neurite_Tracer:_Sholl_analysis|SNT]] can be [[#Importing|analyzed]] by performs Sholl using the ''Sholl Analysis '' plugin.** On the other hand, ''Sholl Analysis'' uses SNT to [[Neuroanatomy#Analyze Traced Cells|Neuroanatomy update siteanalyze tracings]]
* '''[[BARNeuronJ]]'''Another option for 2D reconstructions. NeuronJ features a friendly interface but is restricted to 2D images, is not capable of SWC export and is no longer under active development * ''B''roadly ''A''pplicable ''R''outines that complement '[[:Category:Neuroanatomy|Neuroanatomy Resources]]'Sholl Analysis''in this wiki
* '''[[Strahler_AnalysisNeuroanatomy|Strahler_AnalysisNeuroanatomy update site]]''' Strahler Analysis on [[Skeletonize3D|skeletonized]] arbors (distributed through , distributing e.g., the '''[[NeuroanatomyStrahler_Analysis|Neuroanatomy update siteStrahler_Analysis]])''' plugin
* '''[http://www.imagescience.org/meijering/software/neuronj/ NeuronJ[BAR]]''', ''B''roadly ''A''pplicable ''R'' ImageJ plugin for semi-automated tracing and quantification of two-dimensional arbors. Note outines that [[Simple_Neurite_Tracer|SNT]] can also be used to trace 2D images.complement ''Sholl Analysis''
== Publication ==
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