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Getting started with TrackMate

No change in size, 08:17, 27 September 2016
Choosing a detector: correct spelling to avoid confusion with logarithms and dogs
The choice is actually quite limited. Apart from the '''Manual annotation''', you will find 3 detectors, but they are all based on [[wikipedia:Blob detection#The_Laplacian_of_Gaussian|LoG (Laplacian of Gaussian) segmentation]]. They are described in detail elsewhere, but here is what you need to know.
* The '''Log LoG detector''' applies a plain LoG segmentation on the image. All calculations are made in the Fourier space, which makes it optimal for intermediate spot sizes, between ≈5 and ≈20 pixels in diameter.* The '''Dog DoG detector''' uses the [[wikipedia:Blob detection#The_difference_of_Gaussians_approach|difference of Gaussians]] approach to approximate a LoG filter by the difference of 2 Gaussians. Calculations are made in the direct space, and it is optimal for small spot sizes, below ≈5 pixels.
* The '''Downsample LoG detector''' uses the LoG detector, but downsizes the image by an integer factor before filtering. This makes it optimal for large spot sizes, above ≈20 pixels in diameter, at the cost of localization precision.
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