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Coloc 2 is Fiji's plugin for colocalization analysis. It implements and performs the pixel intensity correlation over space methods of [http://en.wikipedia.org/wiki/Pearson_product-moment_correlation_coefficient Pearson], [[Media:Manders.pdf|Manders]], [[Media:Costes etalColoc.pdf|Costes]], [[Media:LietAlColoc.pdf|Li]] and more, for scatterplots, analysis, automatic thresholding and statistical significance testing.
<span style="color:red">There are many nuances and pitfalls to colocalization analysis. As such, we strongly recommend you read the [[Colocalization Analysis]] section of
Fiji's [[Cookbook]] before attempting to use Coloc 2!</span>
= How to use Coloc 2 =