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TrackMate Accuracy

543 bytes added, 03:29, 26 January 2015
Accuracy measurements.
* The <b>RMSE of detection positions</b> that quantifies how precise is the location of the detected particles. The smaller the better.
 
 
I fully relied on [[Icy]] to compute these values. TrackMate ships an action that exports tracking results to the XML format imposed by the ISBI challenge, and that can be found [https://github.com/fiji/TrackMate/blob/master/src/main/java/fiji/plugin/trackmate/action/ISBIChallengeExporter.java here]. I generated these files for all the conditions of a scenario, and used the [http://icy.bioimageanalysis.org/plugin/ISBI_Tracking_Challenge_Batch_Scoring Icy ISBI challenge scoring plugin] to yield metrics. I then used MATLAB to plot them.
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