Skip to content, Skip to search

Changes

TrakEM2 Scripting

128 bytes removed, 14:22, 9 August 2014
Use GitHub template for GitHub links
All the following are included in Fiji's plugins/Examples/TrakEM2_Example_Scripts/ folder:
*[http://fiji.sc/cgi-bin/gitweb.cgi?p{{GitHub|repo=fiji.git;a=blob;f|path=plugins/Examples/TrakEM2_Example_Scripts/extract_stack_under_arealist.py;hb|label=HEAD Extract stack under AreaList] }} in TrakEM2.*[http://fiji.sc/cgi-bin/gitweb.cgi?p{{GitHub|repo=fiji.git;a=blob;f|path=plugins/Examples/TrakEM2_Example_Scripts/T2_set_all_transforms_to_identity.py;hb|label=HEAD Set all transforms to identity] }} for TrakEM2 objects.*[http://fiji.sc/cgi-bin/gitweb.cgi?p{{GitHub|repo=fiji.git;a=blob;f|path=plugins/Examples/TrakEM2_Example_Scripts/T2_Select_All.py;hb|label=HEAD Select All] }} objects in TrakEM2.*[http://fiji.sc/cgi-bin/gitweb.cgi?p{{GitHub|repo=fiji.git;a=blob;f|path=plugins/Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py;hb|label=HEAD Measure AreaList] }} in TrakEM2.
* A [https://github.com/acardona/Fiji-TrakEM2-scripts/tree/master/TrakEM2 collection of scripts for TrakEM2], hosted by github. Mostly related to inspecting and analyzing [http://fiji.sc/javadoc/ini/trakem2/display/Treeline.html Treeline], [http://fiji.sc/javadoc/ini/trakem2/display/AreaTree.html AreaTree] and [http://fiji.sc/javadoc/ini/trakem2/display/Connector.html Connector] instances, when used for neural circuit reconstruction.
[[Category:Scripting]]
Bureaucrat, emailconfirmed, incoming, administrator, uploaders
12,110
edits