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<div data-externalstyle="false" dir="ltr" style="font-family: 'Calibri', 'Segoe UI', 'Meiryo', 'Microsoft YaHei UI', 'Microsoft JhengHei UI', 'Malgun Gothic', 'sans-serif';font-size:12pt;"><div style="color: rgb(0, 0, 0);">Ah! But yes absolutely. </div><div style="color: rgb(0, 0, 0);">Then what you need is the multi channel analyzer module that Benoit Lombardo did in the MPI-CBG.</div><div style="color: rgb(0, 0, 0);">It will measure spot features in all the channels you provide it with.</div><div style="color: rgb(0, 0, 0);">You will find it here:</div><div style="color: rgb(0, 0, 0);"><a href="https://github.com/tinevez/TrackMate-extras" target="_parent">https://github.com/tinevez/TrackMate-extras</a><br></div><div style="color: rgb(0, 0, 0);" data-signatureblock="true"><div style="color: rgb(0, 0, 0);"><br></div><div style="color: rgb(0, 0, 0);">best</div><div style="color: rgb(0, 0, 0);">jy<br>--<br>Jean-Yves Tinevez<br>PFID - Imagopole<br>Institut Pasteur<br>25-28, rue du Docteur Roux<br>75724 Paris cedex 15 <br>France<br>mob: +33 7 88 17 97 69<br>tel: +33 1 45 68 82 18<br>fax: +33 1 44 38 92 54</div><div style="color: rgb(0, 0, 0);"><br></div></div><div style="padding-top: 5px; border-top-color: rgb(229, 229, 229); border-top-width: 1px; border-top-style: solid;"><div><font face=" 'Calibri', 'Segoe UI', 'Meiryo', 'Microsoft YaHei UI', 'Microsoft JhengHei UI', 'Malgun Gothic', 'sans-serif'" style='line-height: 15pt; letter-spacing: 0.02em; font-family: "Calibri", "Segoe UI", "Meiryo", "Microsoft YaHei UI", "Microsoft JhengHei UI", "Malgun Gothic", "sans-serif"; font-size: 12pt;'><b>De :</b> <a href="mailto:wagner@biomedical-imaging.de" target="_parent">wagner@biomedical-imaging.de</a><br><b>Envoyé :</b> lundi 9 mars 2015 21:25<br><b>À :</b> <a href="mailto:tinevez@pasteur.fr" target="_parent">tinevez@pasteur.fr</a><br><b>Cc :</b> <a href="mailto:imagej-devel@imagej.net" target="_parent">imagej-devel@imagej.net</a></font></div></div><div><br></div><div dir=""><div id="readingPaneBodyContent">Dear Jean-Yves,<br><br>thank you for your answer. I will have look into the ARGBType of the<br>ImgLib2. You are right, TrackMate refuses to start with RGB images but<br>it does not to refuse to start with RGB-Stack images. So my thought was,<br>that I can simply work with RGB-Stack images instead of RGB images?<br><br>Cheers,<br>Thorsten <br><br>Am Montag, den 09.03.2015, 19:55 +0000 schrieb tinevez@pasteur.fr:<br>> Hi Thorsten, <br>> <br>> <br>> I think the way is to wrap your image into a ARGBType ImgLib2 images. <br>> But you would have to change TrackMate because right now the GUI<br>> refuses to start with a RGB image. <br>> <br>> <br>> Best<br>> jy<br>> <br>> <br>> <br>> <br>> --<br>> Jean-Yves Tinevez<br>> PFID - Imagopole<br>> Institut Pasteur<br>> 25-28, rue du Docteur Roux<br>> 75724 Paris cedex 15 <br>> France<br>> mob: +33 7 88 17 97 69<br>> tel: +33 1 45 68 82 18<br>> fax: +33 1 44 38 92 54<br>> <br>> <br>> De : Thorsten Wagner<br>> Envoyé : lundi 9 mars 2015 20:47<br>> À : imagej-devel@imagej.net<br>> <br>> <br>> Dear list,<br>> <br>> I currently want to extend TrackMate with a spot feature for RGB<br>> Stacks.<br>> I want to calculate the hue of the center for each spot to filter the<br>> particle by color before connecting the dots to tracks.<br>> <br>> However, TrackMate uses ImgLib2 and I wondering how to work with RGB<br>> Stack images. I cant find any examples how to do that.<br>> <br>> Any help is highly appreciated!<br>> <br>> Cheers,<br>> Thorsten<br>> <br>> <br>> <br>> _______________________________________________<br>> ImageJ-devel mailing list<br>> ImageJ-devel@imagej.net<br>> http://imagej.net/mailman/listinfo/imagej-devel<br>> <br><br></div></div></div>
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