<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Your amazing. Thanks. Put it on my tab of things I owe you for.<div class=""><br class=""></div><div class="">Thanks for the help in updating from the scijava parent pom to image parent pom. Given all the things you guys did to organize the interrelationships between all these packages (sicjava, imagej, scifio, imagejops etc), I was a little hesitant to see how things might change upon updating to the new poms. Seemed like everything converted pretty smoothly though.<br class=""><div class=""><br class=""></div><div class="">Thanks!!!</div><div class=""><br class=""></div><div class="">Jay</div><div class=""><div class=""><br class=""></div><div class=""><div class=""><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Dec 4, 2014, at 11:40 AM, Curtis Rueden <<a href="mailto:ctrueden@wisc.edu" class="">ctrueden@wisc.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hi Jay,<div class=""><br class=""></div><div class=""><div class="">> Just wondering what might have happened here. Any ideas? All I did was</div><div class="">> create a README.md file on the git repository of my project since the</div><div class="">> last successful build.</div></div><div class=""><br class=""></div><div class="">Yeah, I do not know why the build failure only triggered now. It may be that the Jenkins build didn't trigger correctly before. But I was able to reproduce the failure on the command line on my system.</div><div class=""><br class=""></div><div class="">I pushed a commit that upgrades to new versions of the components, and fixes the build errors:</div><div class=""> <a href="https://github.com/jaywarrick/JEX/commit/4102978037a234ea780b1165251bc6542f9e5fbc" class="">https://github.com/jaywarrick/JEX/commit/4102978037a234ea780b1165251bc6542f9e5fbc</a></div><div class=""><br class=""></div><div class="">I also had to disable the enforcer checks for now since there are issues compiling Java-7-based projects at the moment. We hope to sort that out soon.</div><div class=""><br class=""></div><div class="">Regards,</div><div class="">Curtis</div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Thu, Dec 4, 2014 at 1:25 AM, Jay Warrick <span dir="ltr" class=""><<a href="mailto:warrick@wisc.edu" target="_blank" class="">warrick@wisc.edu</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class="">Hi All,<div class=""><br class=""></div><div class="">Just wondering what might have happened here. Any ideas? All I did was create a README.md file on the git repository of my project since the last successful build. It's complaining about a missing package but it looks like it exists on <a href="http://maven.imagej.net/" target="_blank" class="">maven.imagej.net</a> and it shows it in the dependency hierarchy so it would seem that maven is expecting to have to retrieve it.</div><div class=""><br class=""></div><div class="">Sorry I didn't check to see if it ran before committing. Just didn't expect this to be an issue and now not sure how to diagnose.</div><div class=""><br class=""></div><div class="">Thanks in advance,</div><div class=""><br class=""></div><div class="">Jay</div><div class=""><div class=""><br class=""><blockquote type="cite" class=""><div class="">Begin forwarded message:</div><br class=""><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px" class=""><span style="font-family: -webkit-system-font, 'Helvetica Neue', Helvetica, sans-serif;" class=""><b class="">Date: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif" class="">December 4, 2014 at 12:55:15 AM CST<br class=""></span></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px" class=""><span style="font-family: -webkit-system-font, 'Helvetica Neue', Helvetica, sans-serif;" class=""><b class="">From: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif" class=""><a href="mailto:jenkins@imagej.net" target="_blank" class="">jenkins@imagej.net</a><br class=""></span></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px" class=""><span style="font-family: -webkit-system-font, 'Helvetica Neue', Helvetica, sans-serif;" class=""><b class="">To: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif" class=""><a href="mailto:warrick@wisc.edu" target="_blank" class="">warrick@wisc.edu</a>, <a href="mailto:eberthier@wisc.edu" target="_blank" class="">eberthier@wisc.edu</a>, <a href="mailto:ctrueden@wisc.edu" target="_blank" class="">ctrueden@wisc.edu</a><br class=""></span></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px" class=""><span style="font-family: -webkit-system-font, 'Helvetica Neue', Helvetica, sans-serif;" class=""><b class="">Subject: </b></span><span style="font-family:-webkit-system-font,Helvetica Neue,Helvetica,sans-serif" class=""><b class="">Build failed in Jenkins: JEX #34</b><br class=""></span></div><div class=""><div class="h5"><br class=""><div class="">See <<a href="http://jenkins.imagej.net/job/JEX/34/changes" target="_blank" class="">http://jenkins.imagej.net/job/JEX/34/changes</a>><br class=""><br class="">Changes:<br class=""><br class="">[Jay Warrick] Update README.md<br class=""><br class="">------------------------------------------<br class="">[...truncated 4 lines...]<br class="">Checking out Revision 956550f99b35c21e944ba6ea71a9927483e10cee (origin/master)<br class="">[workspace] $ /bin/sh -xe /tmp/hudson8350546447354885372.sh<br class="">+ git clean -dfx<br class="">Removing core/target/<br class="">[workspace] $ mvn -U -Pdeploy-to-imagej clean deploy<br class="">[INFO] Scanning for projects...<br class="">[INFO] ------------------------------------------------------------------------<br class="">[INFO] Reactor Build Order:<br class="">[INFO] <br class="">[INFO] JEX Multi-Module Build<br class="">[INFO] JEX core functionality<br class="">[INFO] JEX<br class="">[INFO] <br class="">[INFO] ------------------------------------------------------------------------<br class="">[INFO] Building JEX Multi-Module Build 0.0.4-SNAPSHOT<br class="">[INFO] ------------------------------------------------------------------------<br class="">[INFO] <br class="">[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ pom-jex ---<br class="">[INFO] <br class="">[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---<br class="">[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD<br class="">[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace<br class="">[INFO] Storing buildNumber: 956550f99b35c21e944ba6ea71a9927483e10cee at timestamp: 1417676099431<br class="">[WARNING] Cannot get the branch information from the git repository: <br class="">Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref<br class=""><br class="">[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD<br class="">[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace<br class="">[INFO] Storing buildScmBranch: UNKNOWN<br class="">[INFO] <br class="">[INFO] >>> maven-source-plugin:2.3:jar (default) @ pom-jex >>><br class="">[INFO] <br class="">[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---<br class="">[INFO] <br class="">[INFO] <<< maven-source-plugin:2.3:jar (default) @ pom-jex <<<<br class="">[INFO] <br class="">[INFO] --- maven-source-plugin:2.3:jar (default) @ pom-jex ---<br class="">[INFO] <br class="">[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ pom-jex ---<br class="">[INFO] Installing /data/devel/jenkins/jobs/JEX/workspace/pom.xml to /var/lib/jenkins/.m2/repository/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-SNAPSHOT.pom<br class="">[INFO] <br class="">[INFO] --- 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class="">http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/moa/moa/maven-metadata.xml</a><br class="">Downloading: <a href="https://oss.sonatype.org/content/repositories/snapshots/nz/ac/waikato/cms/moa/moa/maven-metadata.xml" target="_blank" class="">https://oss.sonatype.org/content/repositories/snapshots/nz/ac/waikato/cms/moa/moa/maven-metadata.xml</a><br class="">436/436 B <br class="">369/369 B 436/436 B <br class=""><br class="">Downloaded: <a href="http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/moa/moa/maven-metadata.xml" target="_blank" class="">http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/moa/moa/maven-metadata.xml</a> (436 B at 4.5 KB/sec)<br class=""><br class="">Downloaded: <a href="https://oss.sonatype.org/content/repositories/snapshots/nz/ac/waikato/cms/moa/moa/maven-metadata.xml" target="_blank" class="">https://oss.sonatype.org/content/repositories/snapshots/nz/ac/waikato/cms/moa/moa/maven-metadata.xml</a> (369 B at 2.9 KB/sec)<br class="">478/478 B 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class="">http://maven.imagej.net/content/groups/public/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml</a><br class="">527/527 B <br class=""><br class="">Downloaded: <a href="http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml" target="_blank" class="">http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml</a> (527 B at 9.0 KB/sec)<br class=""><br class="">527/527 B <br class=""><br class="">Downloaded: <a href="http://maven.imagej.net/content/groups/public/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml" target="_blank" class="">http://maven.imagej.net/content/groups/public/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml</a> (527 B at 0.4 KB/sec)<br class="">[INFO] <br class="">[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ jex-core ---<br class="">[INFO] <br class="">[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ jex-core ---<br class="">[INFO] <br class="">[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ jex-core ---<br class="">[INFO] Using 'UTF-8' encoding to copy filtered resources.<br class="">[INFO] Copying 170 resources<br class="">[INFO] <br class="">[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ jex-core ---<br class="">[INFO] Changes detected - recompiling the module!<br class="">[INFO] Compiling 666 source files to /data/devel/jenkins/jobs/JEX/workspace/core/target/classes<br class="">[INFO] -------------------------------------------------------------<br class="">[WARNING] COMPILATION WARNING : <br class="">[INFO] -------------------------------------------------------------<br class="">[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Some input files use or override a deprecated API.<br class="">[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Recompile with -Xlint:deprecation for details.<br class="">[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Some input files use unchecked or unsafe operations.<br class="">[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Recompile with -Xlint:unchecked for details.<br class="">[INFO] 4 warnings <br class="">[INFO] -------------------------------------------------------------<br class="">[INFO] -------------------------------------------------------------<br class="">[ERROR] COMPILATION ERROR : <br class="">[INFO] -------------------------------------------------------------<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol<br class=""> symbol: variable DataTools<br class=""> location: class function.plugin.plugins.Import.ImportND2Files<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol<br class=""> symbol: variable DataTools<br class=""> location: class image.roi.PointTester<br class="">[INFO] 8 errors <br class="">[INFO] -------------------------------------------------------------<br class="">[INFO] ------------------------------------------------------------------------<br class="">[INFO] Reactor Summary:<br class="">[INFO] <br class="">[INFO] JEX Multi-Module Build ............................ SUCCESS [1.623s]<br class="">[INFO] JEX core functionality ............................ FAILURE [15.130s]<br class="">[INFO] JEX ............................................... SKIPPED<br class="">[INFO] ------------------------------------------------------------------------<br class="">[INFO] BUILD FAILURE<br class="">[INFO] ------------------------------------------------------------------------<br class="">[INFO] Total time: 17.436s<br class="">[INFO] Finished at: Thu Dec 04 00:55:15 CST 2014<br class="">[INFO] Final Memory: 29M/473M<br class="">[INFO] ------------------------------------------------------------------------<br class="">[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project jex-core: Compilation failure: Compilation failure:<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol<br class="">[ERROR] symbol: variable DataTools<br class="">[ERROR] location: class function.plugin.plugins.Import.ImportND2Files<br class="">[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol<br class="">[ERROR] symbol: variable DataTools<br class="">[ERROR] location: class image.roi.PointTester<br class="">[ERROR] -> [Help 1]<br class="">[ERROR] <br class="">[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.<br class="">[ERROR] Re-run Maven using the -X switch to enable full debug logging.<br class="">[ERROR] <br class="">[ERROR] For more information about the errors and possible solutions, please read the following articles:<br class="">[ERROR] [Help 1] <a href="http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException" target="_blank" class="">http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException</a><br class="">[ERROR] <br class="">[ERROR] After correcting the problems, you can resume the build with the command<br class="">[ERROR] mvn <goals> -rf :jex-core<br class="">Build step 'Invoke top-level Maven targets' marked build as failure<br class="">Archiving artifacts<br class="">Build step 'Groovy Postbuild' marked build as failure<br class=""></div></div></div></blockquote></div><br class=""></div></div><br class="">_______________________________________________<br class="">
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