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.send { color:#77bb77; }
.server { color:#7799bb; }
.error { color:#AA0000; }</style></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div class="bloop_markdown"><p>Never mind! I’m working on a Mac and all it’s preview utilities were auto-rotating the image. The imglib IO is reading the file using the correct dimensions. (smacking head on desk)</p>
<p></p></div><div class="bloop_original_html"><style>body{font-family:Helvetica,Arial;font-size:13px}</style><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;"><br></div> <br><p style="color:#000;">On August 20, 2014 at 9:30:21 AM, Brian Schlining (<a href="mailto:bschlining@gmail.com">bschlining@gmail.com</a>) wrote:</p> <blockquote type="cite" class="clean_bq"><span><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div></div><div>
<title></title>
<div class="bloop_markdown">
<p>Hi All,</p>
<p>I’m reading an image that has the following dimensions: width =
2448 pixels, height = 3264. I’m reading it as an
<code>ImgPlus</code> as follows:</p>
<pre><code>// Scala code
import io.scif.img.IO
val imgs = IO.openImgs("/images/IMG_20140806_080706.jpg")
val imgPlus = imgs.get(0);
</code>
</pre>
<p>The resulting <code>Img</code> has dimensions of [3264x2448x3]
or [HEIGHTxWIDTHxCOLORS; which seems to be transposed from what I
expect. I would expect it to be [WIDTHxHEIGHTxCOLORS]. In fact, if
I convert it to a bufferedImage (see below), then it the
BufferedImage also has the wrong orientation:</p>
<pre><code>import net.imglib2.img.display.imagej.ImageJFunctions
val imagePlus = ImageJFunctions.wrap(img, "")
val bufferedImage = imagePlus.getBufferedImage
println(bufferedImage)
println(s"\twidth = ${bufferedImage.getWidth()}") // prints 3264 -> WRONG
println(s"\theight = ${bufferedImage.getHeight()}") // prints 2448 -> WRONG
</code>
</pre>
<p>Can some explain what’s going on here. I’m very confused.</p>
<p>Thanks</p>
</div>
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<br></div>
<br>
<div id="bloop_sign_1408551645566156800" class="bloop_sign">
<div style="font-family:helvetica,arial;font-size:13px">
-- <br>
Brian Schlining<br></div>
</div>
</div>
<div class="bloop_markdown"></div>
</div></div></span></blockquote> <div id="bloop_sign_1408577818630525952" class="bloop_sign"><div style="font-family:helvetica,arial;font-size:13px">-- <br>Brian Schlining<br></div></div></div><div class="bloop_markdown"><p></p></div></body></html>