<div dir="ltr"><div><div><div>Hi <span name="Ullrich Koethe">Ullrich,<br><br></span></div><span name="Ullrich Koethe"> I found this issue a while ago on my Windows 8 (64-bit) laptop, but stopped looking at it after a brief investigation, since the test was passing on our Win7 VM (and every other system I've tried it on).<br>
<br></span></div><span name="Ullrich Koethe"> Anyway, Curtis and I are trying to reproduce on other systems right now to figure out what's going on.<br><br></span></div><span name="Ullrich Koethe"> Which Java version are you using?<br>
</span><div><div><span name="Ullrich Koethe"><br>The issue can be found here:<br><a href="https://github.com/scifio/scifio/issues/79">https://github.com/scifio/scifio/issues/79</a><br><br></span></div><div><span name="Ullrich Koethe">Thanks for bringing it to our attention!<br>
</span></div><div><span name="Ullrich Koethe"><br></span></div><div><span name="Ullrich Koethe">- Mark<br>
</span></div></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Dec 5, 2013 at 12:15 PM, Ullrich Koethe <span dir="ltr"><<a href="mailto:ullrich.koethe@iwr.uni-heidelberg.de" target="_blank">ullrich.koethe@iwr.uni-heidelberg.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Johannes and Tobias,<br>
<br>
following your instructions, I now installed all dependencies on Linux (64-bit Ubuntu, gcc 4.7.3). Here is what I got:<br>
<br>
In scifio, maven compiles, but then complains<br>
<br>
Failed tests: testDefaultEnabled(io.scif.<u></u>filters.utests.FilterTest)<br>
<br>
In vigra-imglib2 (branch 'wip'), 'mvn install' compiles and produces a number of compiler warnings which seem to be uncritical on first glance, but are confusingly flagged as "[ERROR]" in the maven output.<br>
<br>
When I finally run './avian-run.sh', I get the following output<br>
<br>
java.io.EOFException<br>
at java.util.zip.<u></u>InflaterInputStream.read (line 54)<br>
at java.util.zip.ZipFile$1.read (line 120)<br>
at java.util.zip.ZipFile$1.read (line 114)<br>
at java.util.zip.<u></u>InflaterInputStream.read (line 39)<br>
at java.util.zip.ZipFile$1.read (line 106)<br>
at java.util.Properties$<u></u>InputStreamParser.<u></u>readCharacter (line 192)<br>
at java.util.Properties$Parser.<u></u>parse (line 106)<br>
at java.util.Properties.load (line 21)<br>
at net.imglib2.vigra.NarHelper.<u></u>loadLibrary (line 41)<br>
at net.imglib2.vigra.<u></u>VigraImg3DUnsignedByte.<<u></u>clinit> (line 23)<br>
at net.imglib2.vigra.<u></u>VigraImgFactory3DUnsignedByte.<u></u>create (line 19)<br>
at net.imglib2.vigra.<u></u>VigraImgFactory3DUnsignedByte.<u></u>create (line 14)<br>
at io.scif.img.ImgOpener.openImg (line 301)<br>
at io.scif.img.ImgOpener.openImg (line 217)<br>
at io.scif.img.ImgOpener.openImg (line 200)<br>
at Example.main (line 34)<br>
at Example.main (line 22)<br>
java.lang.<u></u>ExceptionInInitializerError<br>
at net.imglib2.vigra.<u></u>VigraImgFactory3DUnsignedByte.<u></u>create (line 19)<br>
at net.imglib2.vigra.<u></u>VigraImgFactory3DUnsignedByte.<u></u>create (line 14)<br>
at io.scif.img.ImgOpener.openImg (line 301)<br>
at io.scif.img.ImgOpener.openImg (line 217)<br>
at io.scif.img.ImgOpener.openImg (line 200)<br>
at Example.main (line 34)<br>
at Example.main (line 22)<br>
caused by: java.lang.<u></u>UnsatisfiedLinkError: Could not find native library<br>
at net.imglib2.vigra.NarHelper.<u></u>loadLibrary (line 78)<br>
at net.imglib2.vigra.<u></u>VigraImg3DUnsignedByte.<<u></u>clinit> (line 23)<br>
at net.imglib2.vigra.<u></u>VigraImgFactory3DUnsignedByte.<u></u>create (line 19)<br>
at net.imglib2.vigra.<u></u>VigraImgFactory3DUnsignedByte.<u></u>create (line 14)<br>
at io.scif.img.ImgOpener.openImg (line 301)<br>
at io.scif.img.ImgOpener.openImg (line 217)<br>
at io.scif.img.ImgOpener.openImg (line 200)<br>
at Example.main (line 34)<br>
at Example.main (line 22)<br>
<br>
No image is created. The input image I used is attached.<br>
<br>
When I try to compile Tobias' code (branch 'buffer'), I get<br>
<br>
[WARNING] The POM for com.github.maven-nar:nar-<u></u>maven-plugin:jar:3.0.0-rc-3-<u></u>SNAPSHOT is missing, no dependency information available<br>
[ERROR] The build could not read 1 project -> [Help 1]<br>
[ERROR]<br>
[ERROR] The project net.imglib2.vigra:vigra-<u></u>imglib2:1.0.0-SNAPSHOT (/home/ukoethe/src/vigra-<u></u>imglib2/pom.xml) has 2 errors<br>
[ERROR] Unresolveable build extension: Plugin com.github.maven-nar:nar-<u></u>maven-plugin:3.0.0-rc-3-<u></u>SNAPSHOT or one of its dependencies could not be resolved: Failure to find com.github.maven-nar:nar-<u></u>maven-plugin:jar:3.0.0-rc-3-<u></u>SNAPSHOT in <a href="http://mvnplugins.fusesource.org/repo/release" target="_blank">http://mvnplugins.fusesource.<u></u>org/repo/release</a> was cached in the local repository, resolution will not be reattempted until the update interval of <a href="http://mvnplugins.fusesource.org" target="_blank">mvnplugins.fusesource.org</a> has elapsed or updates are forced -> [Help 2]<br>
<br>
Best regards<br>
Ulli<br>
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<br></blockquote></div><br></div>