<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Johannes,<div><br></div><div>oops, forgot to mention here, sorry about that, but my problem was solved by installing a fresh new fiji setup.</div><div>after that everything worked as expected.</div><div><br></div><div>Gerrit.</div><div><br><div><div>On 13 Feb 2013, at 00:31, Johannes Schindelin <<a href="mailto:schindelin@wisc.edu">schindelin@wisc.edu</a>></div><div> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi Gerrit,<br><br>On Wed, 13 Feb 2013, Johannes Schindelin wrote:<br><br><blockquote type="cite">On Tue, 12 Feb 2013, Johannes Schindelin wrote:<br><br>I guess the problem is as I indicated a couple of weeks ago (and as you<br>might have guessed, I really did not get around to take care of it until<br>today): initializing upload sites via SSH only works if you have<br>ij-updater-ssh.jar installed (it comes from the ImageJ update site and<br>is *not* installed by default).<br><br>So for the time being, could you look for that file in the uninstalled<br>files view in the advanced mode of the updater and install it?<br></blockquote><br>Actually, it seems that something else went wrong in your Fiji. Is there<br>some other message in the Console before what you reported? I do get<br>something along the lines<br><br><span class="Apple-tab-span" style="white-space:pre"> </span>...<br><span class="Apple-tab-span" style="white-space:pre"> </span>'jars/rsyntaxtextarea.jar' from update site 'Fiji' shadows the one<br><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>from update site 'ImageJ'<br><span class="Apple-tab-span" style="white-space:pre"> </span>Found 293 plugins.<br><span class="Apple-tab-span" style="white-space:pre"> </span>Created service: imagej.htread.DefaultThreadService<br><span class="Apple-tab-span" style="white-space:pre"> </span>Created service: imagej.event.DefaultEventService<br><span class="Apple-tab-span" style="white-space:pre"> </span>Created service: imagej.plugin.DefaultPluginService<br><span class="Apple-tab-span" style="white-space:pre"> </span>Found 3 upload mechanisms.<br><span class="Apple-tab-span" style="white-space:pre"> </span>...<br><br>Later on I do get<br><br><span class="Apple-tab-span" style="white-space:pre"> </span>...<br><span class="Apple-tab-span" style="white-space:pre"> </span>Found 219 plugins.<br><span class="Apple-tab-span" style="white-space:pre"> </span>Created service: imagej.htread.DefaultThreadService<br><span class="Apple-tab-span" style="white-space:pre"> </span>Created service: imagej.event.DefaultEventService<br><span class="Apple-tab-span" style="white-space:pre"> </span>Created service: imagej.plugin.DefaultPluginService<br><span class="Apple-tab-span" style="white-space:pre"> </span>Found 1 upload mechanisms.<br><span class="Apple-tab-span" style="white-space:pre"> </span>...<br><br>and then when I try something similar to you (initialize an update site<br>via SSH), after tons of "file: ..." and "dependency ..." lines:<br><br><span class="Apple-tab-span" style="white-space:pre"> </span>Uncaught exception in thread Thread[AWT-EventQueue-0,6,main]<br><span class="Apple-tab-span" style="white-space:pre"> </span>java.lang.IllegalArgumentException: No uploader found for protocol ssh<br><span class="Apple-tab-span" style="white-space:pre"> </span>...<br><br>I will work on that issue (which can be worked around as I suggested, by<br>installing ij-updater-ssh.jar first, or as I suggested originally, by<br>installing to a local directory using the file:localhost "SSH host" and<br>then copying the files over to the final destination) that the SSH upload<br>protocol should be installed transparently when needed.<br><br>Ciao,<br>Johannes<br><br><br></blockquote></div><br><div apple-content-edited="true">
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="orphans: 2; text-align: -webkit-auto; text-indent: 0px; widows: 2; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; orphans: 2; text-indent: 0px; widows: 2; border-spacing: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><font size="4">-------------------------------------------------- <br>dr. ing. G (Gerrit) Polder <br>Wageningen UR, Biometris <br>P.O.Box 100, 6700 AC Wageningen, the Netherlands </font></div><div><font size="4"><a href="http://www.wageningenur.nl/en/Persons/dr.ing.-G-Gerrit-Polder.htm">http://www.wageningenur.nl/en/Persons/dr.ing.-G-Gerrit-Polder.htm</a></font></div><div><font size="4"><font>email:</font> <a href="x-msg://3/gerrit.polder@wur.nl">gerrit.polder@wur.nl</a><span class="Apple-style-span" style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "> </span><span class="Apple-style-span" style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><br></span><span class="Apple-style-span" style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; ">phone: +31.317.480751</span><span class="Apple-style-span" style="color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "> </span><span class="Apple-style-span" style="font-weight: normal; font-style: normal; font-family: Calibri, Verdana, Helvetica, Arial; color: rgb(0, 0, 0); font-variant: normal; letter-spacing: normal; line-height: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><br></span></font></div><div style="font-size: medium; "><font size="4"><br></font></div></div></span></div></div></div></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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