<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Hi,</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Sorry for the duplicates, I'm a bit lost as regards to merging and consolidations in the Fiji / ImageJ / ImageJdevel mailing lists. Did Fiji-devel merge into ImageJ-devel in the end ? What about ImageJ/Fiji-users ?</div>
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)"><br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">I come to my point. I would like to test a super-resolution plugin, GraspJ, under OSX :</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<a href="http://code.google.com/p/graspj/" target="_blank" style="color:rgb(17,85,204)">http://code.google.com/p/graspj/</a></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">It is a nice super-resolution package for peak detection, fitting (using GPU computing), image reconstruction (using correct uncertainty-sized gaussian spots) and drift correction without fiduciary markers (using cross-correlation between subsets of the data). It requires Java 7 and OpenCL. I saw it presented by its author, Norman Brede, it is his work as an undergraduate at ICFO in Barcelona if I understood correctly. </div>
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The problem is, I can't get ImageJ to use Java 7 under OSX. I downloaded the newest Java SE 7u4 jdk for OSX here:</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<a href="http://www.oracle.com/technetwork/java/javase/downloads/jdk-7u4-downloads-1591156.html" target="_blank" style="color:rgb(17,85,204)">http://www.oracle.com/technetwork/java/javase/downloads/jdk-7u4-downloads-1591156.html</a></div>
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">installed it and selected Java 7 as the first choice in the Java preferences, but neither Fiji nor ImageJ uses Java 7 when launched (they use the Java 6 installed on my machine).</div>
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Johannes (Schindelin) told me the Fiji launcher for OSX has Java 1.6 hardcoded and doesn't take into account the system-wide Java preferences. Is it the same for plain ImageJ ? Could I force ImageJ to use Java 7?</div>
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Thanks for your help,</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)"><br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Christophe Leterrier</div><div><br></div>