Hi Steffi & everyone,<br><br><blockquote style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex" class="gmail_quote">But Mark, maybe we should talk about the saver?<br></blockquote><br>
The work on ImgSaver is now being done in the imglib-io branch of my Bio-Formats Git repository:<br> <a href="https://github.com/ctrueden/bioformats/tree/imglib-io">https://github.com/ctrueden/bioformats/tree/imglib-io</a><br>
<a href="https://github.com/ctrueden/bioformats/tree/imglib-io/components/scifio/src/ome/scifio/img">https://github.com/ctrueden/bioformats/tree/imglib-io/components/scifio/src/ome/scifio/img</a><br> <a href="https://github.com/ctrueden/bioformats/blob/imglib-io/components/scifio/src/ome/scifio/img/ImgSaver.java">https://github.com/ctrueden/bioformats/blob/imglib-io/components/scifio/src/ome/scifio/img/ImgSaver.java</a><br>
<br>Currently, only a skeleton of the API exists, but Mark will be continuing work throughout this week. Initially, we decided to implement the special case for PlanarImg, which will provide good performance. We will add the more general case after that.<br>
<br>On a related topic: we are hoping to merge the imglib-io project into scifio core. As discussed at the last hackathon, the scifio.jar library now depends on imglib2.jar, which has several advantages. It allows SCIFIO to share ImgLib2's dimensional axis enumeration (Axes & AxisType), as well as pixel types. More importantly to end users, it enables SCIFIO to provide a high-level API for obtaining Img objects from a data source—if we merge imglib-io into scifio. Does this sound like a good plan?<br>
<br>Regards,<br>Curtis<br><br><br><div class="gmail_quote">On Tue, Mar 6, 2012 at 5:38 PM, Stephan Preibisch <span dir="ltr"><<a href="mailto:stephan.preibisch@gmx.de">stephan.preibisch@gmx.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Johannes,<br>
<br>
I am not, I was just looking to add it to the examples, but this can wait.<br>
<br>
But Mark, maybe we should talk about the saver?<br>
<br>
Bye bye,<br>
Steffi<br>
<br>
Am Mar 6, 2012 um 13:57 schrieb Johannes Schindelin <<a href="mailto:Johannes.Schindelin@gmx.de">Johannes.Schindelin@gmx.de</a>>:<br>
<div class="HOEnZb"><div class="h5"><br>
> Hi,<br>
><br>
> please also note that <a href="mailto:imagej-devel@imagejdev.org">imagej-devel@imagejdev.org</a> is now<br>
> <a href="mailto:imagej-devel@imagej.net">imagej-devel@imagej.net</a>.<br>
><br>
> On Tue, 6 Mar 2012, Johannes Schindelin wrote:<br>
><br>
>> On Tue, 6 Mar 2012, Stephan Preibisch wrote:<br>
>><br>
>>> I once implemented an n-dimensional saver for imglib1 using the ImageJ<br>
>>> tiff saver. I will try to port this one today, you will find it in<br>
>>> ImageJFunctions.saveAsTIFFs.<br>
>><br>
>> Please don't. People will start to use it and it will be incompatible<br>
>> with the SCIFIO/Bio-Formats based ImgSaver. Hopefully you agree that 1)<br>
>> that would be bad and 2) the ImgSaver will be more powerful, supporting<br>
>> the complete Bio-Formats infrastructure.<br>
><br>
> I realize that I sounded much harsher than intended. Just wanted to make<br>
> sure that time is used efficiently.<br>
><br>
> If you are in dear need of a saver *right now*, I recommend working with<br>
> Mark Hiner on an interface so that users of your saver will transparently<br>
> be using the scifio-based one when that is available.<br>
><br>
> Ciao,<br>
> Dscho<br>
><br>
> --<br>
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><br>
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</div></div></blockquote></div><br>