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<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Hi Curtis,<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>sorry, I somehow did not get that there was this session
yesterday…<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>I had a look at the ImgLibProcessor and in general it looks
good. I have some comments what could be done more optimized. Should we go over
it maybe on Monday in a short Skype session? <o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Nice greetings,<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Steffi<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:
"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;
font-family:"Tahoma","sans-serif"'> imagej-devel-bounces@imagejdev.org
[mailto:imagej-devel-bounces@imagejdev.org] <b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Friday, July 23, 2010 10:26 PM<br>
<b>To:</b> Imagejdev.org Developers<br>
<b>Subject:</b> [ImageJ-devel] Results from yesterday's imglib coding session<o:p></o:p></span></p>
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<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal style='margin-bottom:12.0pt'>Hi everyone,<br>
<br>
Yesterday the ImageJDev.org developers spent a few hours together, attempting
an initial integration of imglib with ImageJ.<br>
<br>
We ended up (partially) implementing a new ImageProcessor subclass called
ImgLibProcessor that is backed by an mpicbg.imglib.image.Image<T extends
ComplexType<T>> object. This basic proof of concept is available from
our Git repository:<br>
<br>
<a
href="http://imagejdev.org/trac/imagej/changeset/3b073b3a34fae55c6e8aa0de9da210c54d558054">http://imagejdev.org/trac/imagej/changeset/3b073b3a34fae55c6e8aa0de9da210c54d558054</a><br>
<br>
For those interested, the ij.process.ImgLibProcessor class has a main method to
test the functionality; the image used must be grayscale, and either a single
image or a Z-series, due to current limitations in imglib's LOCI Bio-Formats
image importer.<br>
<br>
We also identified several next steps to take to further pursue this work:<br>
<br>
1) Resolve the multichannel issue/limitations<br>
<br>
2) Implement the many unimplemented imglib processor methods<br>
<br>
3) Investigate the ImageStatistics subclasses—maybe create an analogous
ImgLibStatistics class?<br>
<br>
4) Identify the places within ImageJ where type-specific case logic is used<br>
* Add a case for the new imglib backed structure at these locations<br>
<br>
5) More generally, add getters/setters for all public fields throughout ImageJ,
to assist with delegation logic in the future<br>
<br>
Overall, the coding session was a success—people felt like they learned quite a
bit—so we will probably do another one in 2-4 weeks, assuming we have another
appropriate topic.<br>
<br>
-Curtis<o:p></o:p></p>
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