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<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Sounds good to me! <o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>See you then,<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Steffi<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:
"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;
font-family:"Tahoma","sans-serif"'> ctrueden.wisc@gmail.com
[mailto:ctrueden.wisc@gmail.com] <b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Friday, July 23, 2010 10:52 PM<br>
<b>To:</b> Stephan Preibisch<br>
<b>Cc:</b> Imagejdev.org Developers<br>
<b>Subject:</b> Re: [ImageJ-devel] Results from yesterday's imglib coding
session<o:p></o:p></span></p>
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<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal style='margin-bottom:12.0pt'>Hi Stephan,<o:p></o:p></p>
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margin-left:4.8pt;margin-right:0cm'>
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<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'>sorry, I somehow did not get
that there was this session yesterday…</span><o:p></o:p></p>
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</blockquote>
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<p class=MsoNormal style='margin-bottom:12.0pt'><br>
No worries; we weren't expecting you guys to attend. It went for several hours,
and a big part of it was for everybody here to learn about imglib, so it
probably would have been a bit boring for you. ;-)<o:p></o:p></p>
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margin-left:4.8pt;margin-right:0cm'>
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<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'>I had a look at the
ImgLibProcessor and in general it looks good. I have some comments what could
be done more optimized. Should we go over it maybe on Monday in a short Skype
session?</span><o:p></o:p></p>
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</blockquote>
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<p class=MsoNormal style='margin-bottom:12.0pt'><br>
Great, discussing it briefly on Monday sounds good. We had some questions for
you as well (many noted as "TODO" in the code). How about 3pm Dresden
(8am Madison) time?<br>
<br>
-Curtis<o:p></o:p></p>
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<p class=MsoNormal>On Fri, Jul 23, 2010 at 3:48 PM, Stephan Preibisch <<a
href="mailto:preibisch@mpi-cbg.de">preibisch@mpi-cbg.de</a>> wrote:<o:p></o:p></p>
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<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'>Hi Curtis,</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'>sorry, I somehow did not get
that there was this session yesterday…</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'>I had a look at the
ImgLibProcessor and in general it looks good. I have some comments what could
be done more optimized. Should we go over it maybe on Monday in a short Skype
session? </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'>Nice greetings,</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'>Steffi</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
lang=EN-US style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
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border-color:-moz-use-text-color -moz-use-text-color'>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><b><span
lang=EN-US style='font-size:10.0pt'>From:</span></b><span lang=EN-US
style='font-size:10.0pt'> <a href="mailto:imagej-devel-bounces@imagejdev.org"
target="_blank">imagej-devel-bounces@imagejdev.org</a> [mailto:<a
href="mailto:imagej-devel-bounces@imagejdev.org" target="_blank">imagej-devel-bounces@imagejdev.org</a>]
<b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Friday, July 23, 2010 10:26 PM<br>
<b>To:</b> Imagejdev.org Developers<br>
<b>Subject:</b> [ImageJ-devel] Results from yesterday's imglib coding session</span><o:p></o:p></p>
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<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:12.0pt'>Hi
everyone,<br>
<br>
Yesterday the ImageJDev.org developers spent a few hours together, attempting
an initial integration of imglib with ImageJ.<br>
<br>
We ended up (partially) implementing a new ImageProcessor subclass called ImgLibProcessor
that is backed by an mpicbg.imglib.image.Image<T extends
ComplexType<T>> object. This basic proof of concept is available from
our Git repository:<br>
<br>
<a
href="http://imagejdev.org/trac/imagej/changeset/3b073b3a34fae55c6e8aa0de9da210c54d558054"
target="_blank">http://imagejdev.org/trac/imagej/changeset/3b073b3a34fae55c6e8aa0de9da210c54d558054</a><br>
<br>
For those interested, the ij.process.ImgLibProcessor class has a main method to
test the functionality; the image used must be grayscale, and either a single
image or a Z-series, due to current limitations in imglib's LOCI Bio-Formats
image importer.<br>
<br>
We also identified several next steps to take to further pursue this work:<br>
<br>
1) Resolve the multichannel issue/limitations<br>
<br>
2) Implement the many unimplemented imglib processor methods<br>
<br>
3) Investigate the ImageStatistics subclasses—maybe create an analogous
ImgLibStatistics class?<br>
<br>
4) Identify the places within ImageJ where type-specific case logic is used<br>
* Add a case for the new imglib backed structure at these locations<br>
<br>
5) More generally, add getters/setters for all public fields throughout ImageJ,
to assist with delegation logic in the future<br>
<br>
Overall, the coding session was a success—people felt like they learned quite a
bit—so we will probably do another one in 2-4 weeks, assuming we have another
appropriate topic.<br>
<br>
-Curtis<o:p></o:p></p>
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