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<base href="http://fiji.sc/bugzilla/" />
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Issue using Bioformats to read ZVI files"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1250">1250</a>
</td>
</tr>
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<th>Summary</th>
<td>Issue using Bioformats to read ZVI files
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
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<th>OS</th>
<td>Mac OS
</td>
</tr>
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<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
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<th>Component</th>
<td>Plugins
</td>
</tr>
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<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>ctrkate@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>ctrkate@gmail.com
</td>
</tr></table>
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<pre>Hello,
The problem I'm currently having is that, although I hadn't updated FIJI
recently, and was using this exact same version of the program to open ZVI
files a few weeks ago, suddenly, FIJI can't open my files. When I drag and
drop, the familliar Bioformats Options window pops up, everything is set the
same way it was when it was working before. Then, once I hit 'OK', a second
window which I've never seen before pops up asking me to how I'd like to group
the list of files; by dimension, by name, or by file type. However, no matter
which option I chose, the file doesn't open, I just get an error message,
something about a 'null pointer'.
This is different but may be related to the bug that others have reported,
where FIJI opens the ZVI file, but the channel colors are wrong. I was having
the problem a few weeks ago, but seemed to be able to fix it by playing around
with the color channels settings.
I'd appreciate any help you could give me on this matter, thanks!
Kathleen
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.10.5
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-466.1-11M4716
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-466.1
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20160217090804)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20160218075537)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20160314202643)
GDSC: <a href="http://sites.imagej.net/GDSC/">http://sites.imagej.net/GDSC/</a> (last check:20160314062358)
GDSC-SMLM: <a href="http://sites.imagej.net/GDSC-SMLM/">http://sites.imagej.net/GDSC-SMLM/</a> (last check:20160310054351)</pre>
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</p>
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