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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Histogram don't working"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1247">1247</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Histogram don't working
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>maya.alsid@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>maya.alsid@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>I work with Nanodefine's plugin to characterize nanoparticles size from 5 or 10
SEM images, in function of the number of frame I have. The plugin work pretty
well except for the histograms results. I obtained a table results but I can't
plot no histogram for the size characterization.
This message appear :
Rserve>/bin/sh: null: command not found
java.lang.NullPointerException
at
de.biomedical_imaging.ij.rplot.HistogramFrame.getNumberOfBins(HistogramFrame.java:374)
at
de.biomedical_imaging.ij.rplot.HistogramFrame.updateData(HistogramFrame.java:75)
at
de.biomedical_imaging.ij.rplot.HistogramFrame.<init>(HistogramFrame.java:59)
at de.biomedical_imaging.ij.rplot.RPlot.hist(RPlot.java:87)
at de.biomedical_imaging.ij.rplot.rHistogram_.run(rHistogram_.java:90)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at ij.IJ.run(IJ.java:292)
at ij.macro.Functions.doRun(Functions.java:601)
at ij.macro.Functions.doFunction(Functions.java:96)
at ij.macro.Interpreter.doStatement(Interpreter.java:230)
at ij.macro.Interpreter.doBlock(Interpreter.java:608)
at ij.macro.Interpreter.doStatement(Interpreter.java:272)
at ij.macro.Interpreter.doIf(Interpreter.java:966)
at ij.macro.Interpreter.doStatement(Interpreter.java:248)
at ij.macro.Interpreter.doBlock(Interpreter.java:608)
at ij.macro.Interpreter.doStatement(Interpreter.java:272)
at ij.macro.Interpreter.doIf(Interpreter.java:966)
at ij.macro.Interpreter.doStatement(Interpreter.java:248)
at ij.macro.Interpreter.doBlock(Interpreter.java:608)
at ij.macro.Interpreter.runFirstMacro(Interpreter.java:707)
at ij.macro.Interpreter.doStatement(Interpreter.java:263)
at ij.macro.Interpreter.doStatements(Interpreter.java:218)
at ij.macro.Interpreter.run(Interpreter.java:115)
at ij.macro.Interpreter.run(Interpreter.java:85)
at CLI.Refresh_Macros.runScript(Refresh_Macros.java:56)
at HAADF_.run(HAADF_.java:8)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)
java.lang.NullPointerException
at
de.biomedical_imaging.ij.rplot.HistogramFrame.getNumberOfBins(HistogramFrame.java:374)
at
de.biomedical_imaging.ij.rplot.HistogramFrame.updateData(HistogramFrame.java:75)
at
de.biomedical_imaging.ij.rplot.HistogramFrame.plotHist(HistogramFrame.java:390)
at
de.biomedical_imaging.ij.rplot.HistogramFrame.<init>(HistogramFrame.java:61)
at de.biomedical_imaging.ij.rplot.RPlot.hist(RPlot.java:87)
at de.biomedical_imaging.ij.rplot.rHistogram_.run(rHistogram_.java:90)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at ij.IJ.run(IJ.java:292)
at ij.macro.Functions.doRun(Functions.java:601)
at ij.macro.Functions.doFunction(Functions.java:96)
at ij.macro.Interpreter.doStatement(Interpreter.java:230)
at ij.macro.Interpreter.doBlock(Interpreter.java:608)
at ij.macro.Interpreter.doStatement(Interpreter.java:272)
at ij.macro.Interpreter.doIf(Interpreter.java:966)
at ij.macro.Interpreter.doStatement(Interpreter.java:248)
at ij.macro.Interpreter.doBlock(Interpreter.java:608)
at ij.macro.Interpreter.doStatement(Interpreter.java:272)
at ij.macro.Interpreter.doIf(Interpreter.java:966)
at ij.macro.Interpreter.doStatement(Interpreter.java:248)
at ij.macro.Interpreter.doBlock(Interpreter.java:608)
at ij.macro.Interpreter.runFirstMacro(Interpreter.java:707)
at ij.macro.Interpreter.doStatement(Interpreter.java:263)
at ij.macro.Interpreter.doStatements(Interpreter.java:218)
at ij.macro.Interpreter.run(Interpreter.java:115)
at ij.macro.Interpreter.run(Interpreter.java:85)
at CLI.Refresh_Macros.runScript(Refresh_Macros.java:56)
at HAADF_.run(HAADF_.java:8)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................
Done: Checksummer
Thanks a lot for your help,
Maya
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.11.3
java.version => 1.8.0_66
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_66-b17
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.66-b17
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/Applications/Fiji.app/java/macosx/jdk1.8.0_66/jre/Contents/Home/
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20160217160804)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20160218145537)
Java-8: <a href="http://sites.imagej.net/Java-8/">http://sites.imagej.net/Java-8/</a> (last check:20160310173718)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20160313183422)
NanoDefine: <a href="http://sites.imagej.net/Ndef-psizer/">http://sites.imagej.net/Ndef-psizer/</a> (last check:20160311090438)
Files not up-to-date:
6505b48f (MODIFIED) 20160311154022 jars/ij-1.50e.jar
127371d6 (LOCAL_ONLY) 20160215162349 plugins/jars/JavaScript.jar</pre>
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