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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - ClearVolume cannot be opened"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1241">1241</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>ClearVolume cannot be opened
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>lychen@pku.edu.cn
</td>
</tr>
<tr>
<th>CC</th>
<td>lychen@pku.edu.cn
</td>
</tr></table>
<p>
<div>
<pre>Here is the bug report
(Fiji Is Just) ImageJ 2.0.0-rc-43/1.50g; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
45MB of 15000MB (<1%)
java.lang.NullPointerException
at
net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:270)
at
net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:161)
at ij.IJ.runPlugIn(IJ.java)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:662)
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: CHECK_TURNED_OFF
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\ADMINI~1\Desktop\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\ADMINI~1\Desktop\FIJI-W~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20160217230804)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20160218215537)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20160302122848)
BAR: <a href="http://sites.imagej.net/Tiago/">http://sites.imagej.net/Tiago/</a> (last check:20160302222618)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20160222231815)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20160201012112)
CellMotility: <a href="http://sites.imagej.net/CellMotility/">http://sites.imagej.net/CellMotility/</a> (last check:20160305002413)
Cookbook: <a href="http://sites.imagej.net/Cookbook/">http://sites.imagej.net/Cookbook/</a> (last check:20150303060629)
ClearVolume: <a href="http://sites.imagej.net/ClearVolume/">http://sites.imagej.net/ClearVolume/</a> (last check:20160210171043)
CMP-BIA tools: <a href="http://sites.imagej.net/CMP-BIA/">http://sites.imagej.net/CMP-BIA/</a> (last check:20140423223817)
CSIM Laboratory: <a href="http://sites.imagej.net/Acsenrafilho/">http://sites.imagej.net/Acsenrafilho/</a> (last
check:20150318002432)
DiameterJ: <a href="http://sites.imagej.net/DiameterJ/">http://sites.imagej.net/DiameterJ/</a> (last check:20150924020020)
Fuzzy logic and artificial neural networks image processing toolbox for ImageJ:
<a href="http://sites.imagej.net/Astartes91/">http://sites.imagej.net/Astartes91/</a> (last check:20150906223706)
GDSC: <a href="http://sites.imagej.net/GDSC/">http://sites.imagej.net/GDSC/</a> (last check:20160302012351)
GDSC-SMLM: <a href="http://sites.imagej.net/GDSC-SMLM/">http://sites.imagej.net/GDSC-SMLM/</a> (last check:20160204045708)
IBMP-CNRS: <a href="http://sites.imagej.net/Mutterer/">http://sites.imagej.net/Mutterer/</a> (last check:20160209202947)
ImageJ-ITK: <a href="http://sites.imagej.net/ImageJ-ITK/">http://sites.imagej.net/ImageJ-ITK/</a> (last check:20150910233835)
ImageJ-MATLAB: <a href="http://sites.imagej.net/MATLAB/">http://sites.imagej.net/MATLAB/</a> (last check:20151013002000)
ImageScience: <a href="http://sites.imagej.net/ImageScience/">http://sites.imagej.net/ImageScience/</a> (last check:20160109213315)
IMCF Uni Basel: <a href="http://sites.imagej.net/UniBas-IMCF/">http://sites.imagej.net/UniBas-IMCF/</a> (last
check:20151008231420)
LLTT: <a href="http://sites.imagej.net/Alex-krull/">http://sites.imagej.net/Alex-krull/</a> (last check:20141019001721)
MaMuT: <a href="http://sites.imagej.net/MaMuT/">http://sites.imagej.net/MaMuT/</a> (last check:20151023173614)
MiToBo: <a href="http://sites.imagej.net/MiToBo/">http://sites.imagej.net/MiToBo/</a> (last check:20150924201119)
Morphology: <a href="http://sites.imagej.net/Landini/">http://sites.imagej.net/Landini/</a> (last check:20140723225558)
MOSAIC ToolSuite:
<a href="http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/">http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/</a> (last
check:20160105215554)
MS-ECS-2D: <a href="http://sites.imagej.net/MS-ECS-2D/">http://sites.imagej.net/MS-ECS-2D/</a> (last check:20160204234049)
MIST: <a href="http://sites.imagej.net/NIST-ISG-MIST/">http://sites.imagej.net/NIST-ISG-MIST/</a> (last check:20160121025630)
NucleusJ: <a href="http://sites.imagej.net/PouletAxel/">http://sites.imagej.net/PouletAxel/</a> (last check:20141101173602)
OMERO 5.1: <a href="http://sites.imagej.net/OMERO-5.1/">http://sites.imagej.net/OMERO-5.1/</a> (last check:20151009003318)
ResultsToExcel: <a href="http://sites.imagej.net/ResultsToExcel/">http://sites.imagej.net/ResultsToExcel/</a> (last
check:20151125211931)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20160112142758)
Slide Set: <a href="http://cellbio.emory.edu/bnanes/slideset/update/">http://cellbio.emory.edu/bnanes/slideset/update/</a> (last
check:20150917050108)
Tango: <a href="http://sites.imagej.net/Tango/">http://sites.imagej.net/Tango/</a> (last check:20160120115839)
Vale lab plugins: <a href="http://sites.imagej.net/Nico/">http://sites.imagej.net/Nico/</a> (last check:20160302031303)
Files not up-to-date:
d4d1960a (LOCAL_ONLY) 20160309092402 lib/Win64/SimpleITKJava.dll
f85574f3 (OBSOLETE_MODIFIED) 20160309093022 lib/Win64/setrEnv.ps1
4dc40889 (LOCAL_ONLY) 20160309093007 lib/linux64/JavaGD.so
5cece7ec (LOCAL_ONLY) 20160309093030
lib/linux64/SystemEnvironmentVariables.csv
88cba225 (LOCAL_ONLY) 20160309093027 lib/linux64/configureMongoDB.sh
9671bf1f (LOCAL_ONLY) 20160309093023 lib/linux64/installJava3D.sh
a83a94fd (LOCAL_ONLY) 20160309093023 lib/linux64/installMongoDB.sh
faa23114 (LOCAL_ONLY) 20160309093027 lib/linux64/installMongoDBAsAService.sh
55ca7d91 (LOCAL_ONLY) 20160309093022 lib/linux64/installR.sh
ea9c6553 (LOCAL_ONLY) 20160309093009 lib/linux64/libR.so
518d9963 (LOCAL_ONLY) 20160309093007 lib/linux64/libj3dcore-ogl.so
a210858e (LOCAL_ONLY) 20160309093009 lib/linux64/libjri.so
fc0771f9 (LOCAL_ONLY) 20160309093027 lib/linux64/mongoStart.sh
7f540e3b (LOCAL_ONLY) 20160309093027 lib/linux64/mongoStop.sh
b9556531 (LOCAL_ONLY) 20160309093029 lib/linux64/runTerminal.sh
432efeb8 (LOCAL_ONLY) 20160309093028 lib/linux64/setEnvVarFromKeyAndValue.sh
c28ebbff (LOCAL_ONLY) 20160309093026 lib/linux64/setMongoDBEnv.sh
6a9567db (LOCAL_ONLY) 20160309093023 lib/linux64/setREnv.sh
b0398adb (LOCAL_ONLY) 20140212174320
plugins/DeconvolutionLab/DeconvolutionLab_.jar
a4c91ede (LOCAL_ONLY) 20160128153610 plugins/Droplet Actions/Open as
8-bit.ijm
07ffcc91 (LOCAL_ONLY) 20120109162356 plugins/FeatureDetector_.class
fd001f90 (LOCAL_ONLY) 20151105104547 plugins/PureDenoise_.jar
088c1815 (LOCAL_ONLY) 20151008173540 plugins/Running_ZProjector.class
abe6a2ae (LOCAL_ONLY) 20120109162356 plugins/SteerableJ_.class
1d9597be (LOCAL_ONLY) 20150618103040 plugins/TIA/TIA_Reader.jar
203df37a (LOCAL_ONLY) 20151124085553 plugins/Time_Series_Analyzer.jar
af09313f (LOCAL_ONLY) 20160304150806 plugins/ijtools.jar
38b10ec9 (LOCAL_ONLY) 20160309082734 plugins/image_edge.jar
4c0811ae (LOCAL_ONLY) 20120109163056 plugins/steerablej.jar</pre>
</div>
</p>
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