<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Jython script crashes"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1216">1216</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Jython script crashes
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>felix.meyenhofer@unifr.ch
</td>
</tr>
<tr>
<th>CC</th>
<td>felix.meyenhofer@unifr.ch
</td>
</tr></table>
<p>
<div>
<pre>When I try to run Plugins>Registration>Correct 3D drift
the following error occurs:
org.python.core.PyException: null
at org.python.core.Py.ImportError(Py.java:304)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.imp.import_logic(imp.java:790)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.imp.import_module_level(imp.java:842)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.imp.importName(imp.java:917)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.ImportFunction.__call__(__builtin__.java:1220)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.PyObject.__call__(PyObject.java:357)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.__builtin__.__import__(__builtin__.java:1173)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.imp.importFromAs(imp.java:1011)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.imp.importFrom(imp.java:987)
~[jython-shaded-2.5.3.jar:2.5.3]
at
org.python.pycode._pyx0.f$0(C:\Users\Public\Fiji.app\plugins\Scripts\Plugins\Registration\Correct_3D_drift.py:298)
~[na:na]
at
org.python.pycode._pyx0.call_function(C:\Users\Public\Fiji.app\plugins\Scripts\Plugins\Registration\Correct_3D_drift.py)
~[na:na]
at org.python.core.PyTableCode.call(PyTableCode.java:165)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.PyCode.call(PyCode.java:18)
~[jython-shaded-2.5.3.jar:2.5.3]
at org.python.core.Py.runCode(Py.java:1275)
~[jython-shaded-2.5.3.jar:2.5.3]
at
org.scijava.plugins.scripting.jython.JythonScriptEngine.eval(JythonScriptEngine.java:76)
~[scripting-jython-0.2.4.jar:0.2.4]
at org.scijava.script.ScriptModule.run(ScriptModule.java:173)
~[scijava-common-2.50.1.jar:2.50.1]
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
[scijava-common-2.50.1.jar:2.50.1]
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
[scijava-common-2.50.1.jar:2.50.1]
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
[scijava-common-2.50.1.jar:2.50.1]
at
org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
[scijava-common-2.50.1.jar:2.50.1]
at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_66]
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
[na:1.8.0_66]
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
[na:1.8.0_66]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_66]
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.8.0_66
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_66-b18
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.66-b18
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: C:\Program Files\Java\jdk1.8.0_66/jre
imagej.dir => C:\Users\Public\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20151222031554)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20151222052403)
Java-8: <a href="http://sites.imagej.net/Java-8/">http://sites.imagej.net/Java-8/</a> (last check:20160107181822)
Files not up-to-date:
d290c110 (LOCAL_ONLY) 20151218154910 jars/commons-io-2.4.jar
c6325009 (LOCAL_ONLY) 20151218154940 jars/omero/imagej-omero-0.3.2.jar
1445b008 (LOCAL_ONLY) 20151218154949 jars/omero/omero-client-5.1.2-ice35.jar
2f2a824f (LOCAL_ONLY) 20151218154950 jars/omero/scijava-log-slf4j-1.0.0.jar
928ffe97 (LOCAL_ONLY) 20151218154912 plugins/Adapt__v1.146.jar
8808d802 (LOCAL_ONLY) 20151218154909 plugins/BioVoxxel_Plugins.jar
bae2315e (LOCAL_ONLY) 20151218154910 plugins/Data_Analysis.jar
4c4c0e80 (LOCAL_ONLY) 20151218154912 plugins/IA_Class_Library_v1.123.jar
1edfbfde (LOCAL_ONLY) 20151215213624 plugins/Imaris/ImarisBridgeUtils.jar
eb679ca0 (LOCAL_ONLY) 20151215213624 plugins/Imaris/Imaris_Bridge.jar
1c348610 (LOCAL_ONLY) 20151218154911
plugins/Particle_Tracker_Library_v1.125.jar
fe58c8cc (LOCAL_ONLY) 20151218154643 plugins/jars/nanozoomer-1.0.0.jar
8e8db316 20151218154907 plugins/mcib3d-suite/mcib3d-core.jar
a4ccc1f2 20151218154907 plugins/mcib3d-suite/mcib3d_plugins.jar</pre>
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